Effector profile
| PlantPEAD ID: PlantPEAD00008 | Uniprot ID: Q888Y8 | Source: Article |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain ATCC BAA-871 / DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: HopPtoD1 | NCBI Gene ID: AE016853 | |
| Entry name: HOPD1_PSESM | Protein name: Effector protein hopD1 | |
| DOI: 10.1073/pnas.112183899 | ||
Gene/Protein information
Gene sequence:
ATGAATCCTCTACGATCTATTCAACACAACATTGCAACTCCCCCAATCAGTGGCGGTCAGCCATTAGACGCGGTGGGCCCTCAGGCCCAGCAATCCCATCCTAAAAGGATTTCACCTTCTCAATTGAGCCAAAGCGCTCACCAGGCTCTAGAACGCCTTTCAGCTAATGCCGAACACCAACGCCTTGCATCACTGGTACGCAACGCTCTGCAGGATGGCACATTTCAATTTCAATCCAGTAACCACACGCAAGTAACCTATAAAGCGTCAATCTGTCTGCCAGCTGACACCGATACCGTGAGAACCGACCACTTGATTAATAACGAGCTGACGGTTCAGGCCCGATTAAATGATCAATCGGAGTACGACATCGTCAGCGCACATTTGCATGGCTCTTCGAAAGCCATATCCTTCGACGTACCCAGCCCCCCGCCCGCACATGGTTCAGCATCTTCTGTCTTGAGTGAACGGACCCATCTAGGTATGAGTCGCGTTCTCTCACAAGATGCAGTAGACAGCAGTAGCCTGGAAACTCCGTTACTGAGCTCGCCAGACCATTCTCGTCCGCCATCACAGCCAAAGCCCGTGCATATCGGGTCGGTCCGCAGGGACTCTGGTAGCCTTGTTTCCGATAACCCGGTAGTGCAGGCCCTGCTATCGTTTGCGCAGGCCGACCAGGCATTTCCACCACAGGCCGCGAGCATTGCCGGGGTCCAGCTGGAAATGCGGCCACGTCGGGATATTGAGAAAGCACTTGAGGAATTCAAAGGCGCCTTCACGGTGGTGAAGGCGCAACTGATGTCCGGTGCCAACTCGTCGGAGCGTGTAGATGAGGATGTCAACGCAGACATCCATATCCCCTTATTGCTCAAGGCCATCGAGCGGGGGGCTGCGGCATTTGGTCCAAACGCATCAATCGGCCAGAATAGCGCGAAAGCGTTTCTCGCCTCATGTGCTCCCAAGATCACGTCCAATGACGATGTCCTCTCCGAGTTCATCAACCAGAAACTCAAGGGGGACGACGATCTTCAGGTTCGCCTGGGCGCACAGGAATTGTTGCATGTAGCCACCAAGAAGGAATTCCAGCTCGGCGGTCTAGCCGGCAGCATCGGGGTCAGCAGCATACTCGGCTCGGCATGGGAGCTTGGCGCTTCTGAGCTGTTGAAAAATGCCATCTTCGGCAAAAATTTCTCACCGAGCCAATATGCCCTGCAATTGGCTGGAATCGATTCAGTGCCTCCTTTGATTATCGAGTCCATGGACACCATGTGCGTACTTGCCATCATCAAGGGCATGAAGGGTGAGGAGTGGTCCATGAGCGATCTACTTCCCAAGGCGTTGAAGGCCGGTGCTATTTCCTCGGTGGTGTCATTCCCCAATAATGTTTTGCAGTATGCAGGTTTCAAATCCAGAGTCGGCGATCTTGCGGCAAACTCAGTGACAACTGAAGCGGCCATCTTTGGCGCCGCCTCCGGTATTCCACCCGAGGTCAAGGAAAGTGAAGAGCTGATGCGTGCTGGCTTATTCCAGAGCATGAAGGACGGCGTGATGGCTCATTCAGGCGAGGGGGTGGACACCAAAAAAACGATTGAGCGGATGACGCGCCATGCGCTGGATATCGCTCCGGGCGAAAGCACCGCTGTCAAGTCCATGGGGCTGGCATCGATTGTCGGGATGATTCCACTGATTGCCAGCAACAAGGCAACCGGGCTGCTGTCGGAACAGGTACTGCGTATTTTCCGGAGCGCCGTCTTCAATCCAATCGAAGCCATCGCTCTGAACGCGTTGGCGCTTGGCGGGCGTGTCAACGTTCCCGGGCTATTTGATTCCGACAATGCCAAGCATGCACGCGTGGTACAAACCATCCTTGCGCGGGCCAGCCAGCACATGGAAGCTGGAGACCGTGACATTTCCGCAGAGGAGCTACATCAAATGCTGGCTCCCCGGAGCGAGTTCCTGCGCCATGTGGGATCTGCGATTGTCAACGGCATGAATGCCAGCTTTGAGGCAATTCCCGCCCTGGTTCGGAAGCTTGGATATGGTGAGGCTCCATTGGCCGAACGTATTCCGTATCAAGACCTGGCTGTGCCCGACACGTCGCGGCAGCCCGCACCCTGA
Protein sequence:
MNPLRSIQHNIATPPISGGQPLDAVGPQAQQSHPKRISPSQLSQSAHQALERLSANAEHQRLASLVRNALQDGTFQFQSSNHTQVTYKASICLPADTDTVRTDHLINNELTVQARLNDQSEYDIVSAHLHGSSKAISFDVPSPPPAHGSASSVLSERTHLGMSRVLSQDAVDSSSLETPLLSSPDHSRPPSQPKPVHIGSVRRDSGSLVSDNPVVQALLSFAQADQAFPPQAASIAGVQLEMRPRRDIEKALEEFKGAFTVVKAQLMSGANSSERVDEDVNADIHIPLLLKAIERGAAAFGPNASIGQNSAKAFLASCAPKITSNDDVLSEFINQKLKGDDDLQVRLGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKNFSPSQYALQLAGIDSVPPLIIESMDTMCVLAIIKGMKGEEWSMSDLLPKALKAGAISSVVSFPNNVLQYAGFKSRVGDLAANSVTTEAAIFGAASGIPPEVKESEELMRAGLFQSMKDGVMAHSGEGVDTKKTIERMTRHALDIAPGESTAVKSMGLASIVGMIPLIASNKATGLLSEQVLRIFRSAVFNPIEAIALNALALGGRVNVPGLFDSDNAKHARVVQTILARASQHMEAGDRDISAEELHQMLAPRSEFLRHVGSAIVNGMNASFEAIPALVRKLGYGEAPLAERIPYQDLAVPDTSRQPAP
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 74955 | 705 | 5.94 | -0.128 | 46.88 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
Q94F58
|
NAC domain-containing protein 89
|
NAC089
|
Arabidopsis thaliana (related: thale cress)
|
MDTKAVGVSKDTAASMEASTVFPGFKFSPTDVELISYYLKRKMDGLERSVEVIPDLEIYNFEPWDLPDKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKSGSEVIGTKRTLVFHIGRAPKGERTDWIMHEYCVKGVSLDDAMVVCRVRRNKEYNSGTSQKAPKPNSSAEKHAKVQNGATSSGSPSDWDNLVDFYLAGESGEKLLAEMAESSENLQVDNDEDFFADILRDEIINLDEAVMTGNTPNEVPTLESASMEIRVLPLPNMIDKQMSSLLEERPSQKKKGKDATESLSSCFVGLYSIKSVNKARWDVIIGVVALIAMLFYLE
|
|
F4JN35
|
Protein NTM1-like 9
|
NTL9
|
Arabidopsis thaliana (related: thale cress)
|
MGAVSMESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVCKWEPWDLPALSVIKTDDPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVFYRGRAPKGERTNWIMHEYRPTLKDLDGTSPGQSPYVLCRLFHKPDDRVNGVKSDEAAFTASNKYSPDDTSSDLVQETPSSDAAVEKPSDYSGGCGYAHSNSTADGTMIEAPEENLWLSCDLEDQKAPLPCMDSIYAGDFSYDEIGFQFQDGTSEPDVSLTELLEEVFNNPDDFSCEESISRENPAVSPNGIFSSAKMLQSAAPEDAFFNDFMAFTDTDAEMAQLQYGSEGGASGWPSDTNSYYSDLVQQEQMINHNTENNLTEGRGIKIRARQPQNRQSTGLINQGIAPRRIRLQLQSNSEVKEREEVNEGHTVIPEAKEAAAKYSEKSGSLVKPQIKLRARGTIGQVKGERFADDEVQVQSRKRRGGKRWKVVATVMVAVMVGVGMGIWRTLVSS
|
|
Q8VZW1
|
Aquaporin NIP1-1
|
NIP1-1
|
Arabidopsis thaliana (related: thale cress)
|
MADISGNGYGNAREEVVMVNLKDEVEHQQEMEDIHNPRPLKKQDSLLSVSVPFLQKLIAEFLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNRAIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPALVYGCYKGIWIYLVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFLKTVRIGST
|
External Links
Interpro:
Pfam:
SMART:
KEGG: pst:PSPTO_0876
PRINTS: