Effector profile
| PlantPEAD ID: PlantPEAD00032 | Uniprot ID: Q888W1 | Source: Article |
| Localization: Apoplastic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain ATCC BAA-871 / DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: HopAH1 | NCBI Gene ID: AE016853 | |
| Entry name: Q888W1_PSESM | Protein name: Type III effector HopAH1 | |
| DOI: 10.1111/j.1365-2958.2006.05350.x | ||
Gene/Protein information
Gene sequence:
ATGAGTATGAATACCTCTGTAAGCAACAACGGCCCTGTGTGGTCCCCCGTCTCATCGGGCAATCACGCGCCGAGCCCGGACTTCTCCGGGAAATCATCGAGCAATGCCGTGCACTTTCTTTCTCCGGAAAGTGCCCATCGTTCGCCAAGCGCGGTGAGTTGGGGGAACAGCACGCCGACAGCCGCCACCACAGGGAATGGACGAGCGGGGGGCGCGGGACAGAGTGGCCTGGTCGAGGCCTTGAAGACGCTCATCTATGCGTTGCTAAAAAGCGTAATCGGAAATGCCTCCGCCCATAATCGTTCTGAAAGCCAGCCTTCTGCTTCGCCCGGAAACGGACACGGACAGGCTTCCACCTGCAGTGCTGCCAGTCCGACTTCAGGCTCAAACCCGTCTCAACAGCCCAGCGATACCCCGGCGTTCAATAGCGCGGGGTTGGGTGCTCATGGCGGCGCGAACACGGTCCCTGACCGGATTGCGTCTCCCGACGCAGCGCGAAAAATGGTTGAGGATGTTAAAAATGCCGGCGGTGGAACACTGCGCATCCAGATGACTCACGACCAGATCAATGACCCGGCGCAAATGGCCAAGCTCAAGGCGATGGTCGATGCCGGTGACAAACAAGGGGTCAAGGTTCAGTTTACGTTCCGCGACAACGCCAATGGTGGCGGTGGCAATGTGCTGACGGGCGACAAGCTGAAACAAGCGGCCGACGATGTCAAAAACGTAGTGTCTGCACTTGGAAAACACCCAAGCTTTGTACTCGACACCTTCAATGAAGGTGGCAAAAGTGCGACTCAGGATTGGGCCAACATGCAGAGCACGTTGATCAAGTCTGCGCGTGACGCGGGTTATAAAGGCGACATCGTGGTTGAGGACAGCAATTGGGGCGGTGGTCTGACGGCTGGCGGGGAAAGCGGACTGGTCAAATACGCCGCTCAATTAAAGGCCGCCAACGGCAGTAACAACCCCGGCCTGATCGGCAGTATCCATGAATACGCCAGCGGTGCCGACGCCTCTTCACGCCTGGGATCGGAGATCAAGGCGCTGAGCGGCGCAGGCTTCAAACCTCAGATCGGCGAAGTCGGCAATGCCAACTGGACCGGGGGCAGTAACTTCGAACAGCGTGACGGGGCCAATCAGGCCGTAAAAGACAACATGGGCGCGCTGAAAGCCGCCGGTGCCGATGTCCTGCCGTGGATGGACCAGTTCCAGGGCGGCAAGATCAAACACGATGTCGGCTTCTCGAAAGGGGATCAATTCTCCTGA
Protein sequence:
MSMNTSVSNNGPVWSPVSSGNHAPSPDFSGKSSSNAVHFLSPESAHRSPSAVSWGNSTPTAATTGNGRAGGAGQSGLVEALKTLIYALLKSVIGNASAHNRSESQPSASPGNGHGQASTCSAASPTSGSNPSQQPSDTPAFNSAGLGAHGGANTVPDRIASPDAARKMVEDVKNAGGGTLRIQMTHDQINDPAQMAKLKAMVDAGDKQGVKVQFTFRDNANGGGGNVLTGDKLKQAADDVKNVVSALGKHPSFVLDTFNEGGKSATQDWANMQSTLIKSARDAGYKGDIVVEDSNWGGGLTAGGESGLVKYAAQLKAANGSNNPGLIGSIHEYASGADASSRLGSEIKALSGAGFKPQIGEVGNANWTGGSNFEQRDGANQAVKDNMGALKAAGADVLPWMDQFQGGKIKHDVGFSKGDQFS
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 42878 | 422 | 6.8 | -0.482 | 29.35 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR001547,IPR017853
Pfam: PF00150
SMART:
KEGG: pst:PSPTO_0905
PRINTS: