Effector profile
PlantPEAD ID: PlantPEAD00063 Uniprot ID: Q87Y16 Source: Article
Localization: Cytoplasmic(Exp) Pathogen taxonomy ID: 317 Pathogen type: Bacteria
Species: Pseudomonas syringae Strain: pv. tomato strain ATCC BAA-871 / DC3000 Other name: Pseudomonas syringae tomato
Gene name: AvrPto1 NCBI Gene ID: AE016853
Entry name: Q87Y16_PSESM Protein name: Type III effector protein AvrPto1
DOI: 10.1126/science.1203659
Gene/Protein information
Gene sequence:
ATGGGAAATATATGTGTCGGCGGATCCAGGATGGCCCATCAGGTGAACTCCCCAGACCGAGTTAGTAACAACTCGGGTGACGAAGATAACGTAACGTCCAGTCAACTGCTGAGCGTCAGACATCAACTTGCGGAGTCTGCTGGTGTACCAAGAGATCAGCATGAATTTGTTAGTAACCAAGCACCTCAAAGCCTGAGAAATCGCTACAACAATCTTTACTCACATACGCAAAGAACACTGGATATGGCGGACATGCAGCATAGGTACATGACGGGAGCGTCAGGAATCAATCCGGGAATGCTGCCACATGAGAATGTGGACGATATGCGTAGCGCTATAACTGATTGGAGTGACATGCGCGAAGCTCTGCAGTACGCAATGGGTATCCATGCCGACATCCCACCGTCTCCAGAGCGATTTGTTGCGACTATGAACCCGAACGGATCAATTCGAATGTCAACACTTTCTCCTAGCCCGTACCGTAACTGGCAATGA
Protein sequence:
MGNICVGGSRMAHQVNSPDRVSNNSGDEDNVTSSQLLSVRHQLAESAGVPRDQHEFVSNQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDDMRSAITDWSDMREALQYAMGIHADIPPSPERFVATMNPNGSIRMSTLSPSPYRNWQ
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
18329.3 164 5.92 -0.772 43.69
Plant infestation information
Experimental plant: Arabidopsis thaliana (related: thale cress)
Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana Disease name: Bacterial speck
Host classification: Eudicots NCBI Species: 4081, 3702
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
Q40234
Protein kinase
Pto
Solanum lycopersicum (related: tomato)
MGSKYSKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQESVI