Effector profile
| PlantPEAD ID: PlantPEAD00073 | Uniprot ID: Q888Y7 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain ATCC BAA-871 / DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: HopQ1-1 | NCBI Gene ID: AE016853 | |
| Entry name: Q888Y7_PSESM | Protein name: Type III effector HopQ1-1 | |
| DOI: 10.1371/journal.pone.0059684; 10.3389/fpls.2024.1335830 | ||
Gene/Protein information
Gene sequence:
ATGCATCGTCCTATCACCGCAGGCCATACCACCTCACGTCTCATCCTAGATCAGTCAAAACAAATATCACGTACCCCATCGGAAAGTAGCGCGCAATCAGCGCTTTCTCAGCAAGCAAGCATGAGCAGCCCAGTTTTGGAGCGGTCGAAAAGTGCGCCAGCTTTATTGACTGCGGCACAGCGCACGATGCTTGCACAAGTGGGAGCCTGTAACGCTCATCTGACCTCAGATGAAAACATGGCCATCAACGAACTGAGATCACACAAGCCCCTTTTACCTAAGGATACGTGGTTTTTCACTGATCCTAACAAGGACCCAGATGATGTCGTGACCTACACCTTGGGCAAGCAATTGCAGGCTGAGGGCTTTGTGCACATCACGGATGTAGTGGCGACACTGGGTGATGCTGAAGTTCGCTCTCAACGTGCCGAGATGGCCAAAGGCGTGTTCAACAAGCTTGAGTTGCATGACGTGCATGTGTCGCGTGGTCGGGATTACGCAATGAATTCGCTTCAGTCGAAGGAACATGCCAAATTTTTACTGGAAGGTCATGCTTTAAGGGCTGGACCTGGTGAAATACACCGCGACAGCTTGCAGGACATGAGCAGGCGCCTGGCCCGTGCGCCACATGGAGTCGGTATTGTCGTAATTGCAGGCATGAGTGATATCAATGCGCTCATCACTACCTGCCCGGATATGGTGCGCGAACGGGTTGATGACATCACCATCATGGGCGGCGTCGAGCCTTTAAAGGACGCAGATGGTTTTGTACAGCCTGATGCACGCGCTTACAACAATGCGACCGACATGGACGCTGCGCGCAGTCTTTATCGGAAAGCGCAGGAGCTTGGCATTCCACTTCGTATAGTGACAAAGGAGGCGGCCTATAAAACGGCGGTTTCGCCTTCATTTTACGAAGGGATAGCGGGGAGCGGACATCCAGTAGGCCACTACCTGAGAGACGTTCAGAAGAGTGCGTTGAAAGGCCTCTGGGAAGGTATTCAAGCTGGATTGCTTCCCGGGTTGGATGACTCATGGTTCTTTCGGACGTTCATGCCGAATGCACAGATTGAAGCAGCACAACTGGATAAAAATAAAGAGAGTTCGTTTGAAGATATCTGGCCTAAGGTGACGAAGCTAAACCTGTATGATCCTCTGACATTACTGGCCTCAGTGCCAGGGGCGGCAAAACTGCTATTTAAACCAAAAGCTATACACACAGAAGGATTTGGTGTTGTAGAGCAAGTAGGTCCAGATGATGTGACGCATCCAGAGAAAGCAAAGTTATTGATGTCCGCTTTAGCCAAATCTGCGCTTGTCCAGTCGACGGTAGCCCCAGATTGA
Protein sequence:
MHRPITAGHTTSRLILDQSKQISRTPSESSAQSALSQQASMSSPVLERSKSAPALLTAAQRTMLAQVGACNAHLTSDENMAINELRSHKPLLPKDTWFFTDPNKDPDDVVTYTLGKQLQAEGFVHITDVVATLGDAEVRSQRAEMAKGVFNKLELHDVHVSRGRDYAMNSLQSKEHAKFLLEGHALRAGPGEIHRDSLQDMSRRLARAPHGVGIVVIAGMSDINALITTCPDMVRERVDDITIMGGVEPLKDADGFVQPDARAYNNATDMDAARSLYRKAQELGIPLRIVTKEAAYKTAVSPSFYEGIAGSGHPVGHYLRDVQKSALKGLWEGIQAGLLPGLDDSWFFRTFMPNAQIEAAQLDKNKESSFEDIWPKVTKLNLYDPLTLLASVPGAAKLLFKPKAIHTEGFGVVEQVGPDDVTHPEKAKLLMSALAKSALVQSTVAPD
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 48685.4 | 447 | 6.32 | -0.281 | 48.22 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found), Glycine max (related: soybean) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
O22286
|
BTB/POZ and MATH domain-containing protein 3
|
BPM3
|
Arabidopsis thaliana (related: thale cress)
|
MSTVGGIEQLIPDSVSTSFIETVNGSHQFTIQGYSLAKGMSPGKFIQSDIFSVGGYDWAIYFYPDGKNPEDQSSYISLFIALASDSNDIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKGSMWGYKRFFKRSALETSDYLKDDCLVINCTVGVVRARLEGPKQYGIVLPLSNMGQGLKDLLDSEVGCDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKAMLSFIYTDVLPNVHEITGSTSASSFTNMIQHLLAAADLYDLARLKILCEVLLCEKLDVDNVATTLALAEQHQFLQLKAFCLEFVASPANLGAVMKSEGFKHLKQSCPTLLSELLNTVAAADKSSTSGQSNKKRSASSVLGCDTTNVRQLRRRTRKEVRAVS
|
|
P42652
|
14-3-3 protein 4
|
TFT4
|
Solanum lycopersicum (related: tomato)
|
MADSSREENVYLAKLAEQAERYEEMIEFMEKVAKTADVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVNTIKEYRSKIEADLSKICDGILSLLESNLIPSASTAESKVFHLKMKGDYHRYLAEFKTGTERKEAAENTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDNADDVGDDIKEASKPESGEGQQ
|
External Links
Interpro: IPR036452
Pfam:
SMART:
KEGG: pst:PSPTO_0877
PRINTS: