Effector profile
| PlantPEAD ID: PlantPEAD00133 | Uniprot ID: Q88BW6 | Source: Database |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain ATCC BAA-871 / DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: PSPTO_5633 | NCBI Gene ID: AE016854 | |
| Entry name: Q88BW6_PSESM | Protein name: DUF3757 domain-containing protein | |
| DOI: 10.1093/nar/gkab1037 | ||
Gene/Protein information
Gene sequence:
ATGAACAGGCTTCACAAGACCAGTCTGCTGGCGGCTATATTGACCGCATCCCCCTGCATTATGGCAGCTAACGCTCATGCTATGAGTTGTCCTGTCCCGCAAAGCGTGAAGTACGTTAATGGTATCTATATCGCGCCGGAAACGTTTGCTGGTTGGGAGGGGAACTGGGTTTCTCAACCACACAAGAAACACTCCATTAAAGAGTTTTCCACTGCTTTATATCTTTCAGTGGATAAAAGTCAGAAGGGAGGAACATTGACTAACTGTAGTTATTCACTAAGCGGAGATAATGGCGTAATAGATCTTGAGTATCGAAAATCAGGAAATGAGAATAGACTAAAGACACTTATCGTTTCCATTGAAGGTCAGCACAATTGGATTAAAGAGCGTGGCGCGGTTGGAATTCAAGGATATGAATGTACAAAGTCAGCATCTGAGTGTCAGTTCGTTCCGCTGCGGCTAAACGAGGACTGA
Protein sequence:
MNRLHKTSLLAAILTASPCIMAANAHAMSCPVPQSVKYVNGIYIAPETFAGWEGNWVSQPHKKHSIKEFSTALYLSVDKSQKGGTLTNCSYSLSGDNGVIDLEYRKSGNENRLKTLIVSIEGQHNWIKERGAVGIQGYECTKSASECQFVPLRLNED
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 17261.6 | 157 | 8.26 | -0.314 | 37.9 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR022231
Pfam: PF12582
SMART:
KEGG: pst:PSPTO_5633,pst:PSPTO_B0003
PRINTS: