Effector profile
| PlantPEAD ID: PlantPEAD00143 | Uniprot ID: Q48B66 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. phaseolicola strain 1448A / Race 6 | Other name: Pseudomonas savastanoi pv. phaseolicola |
| Gene name: AvrB2 | NCBI Gene ID: CP000059 | |
| Entry name: Q48B66_PSE14 | Protein name: Type III effector AvrB2 | |
| DOI: 10.1111/nph.12654 | ||
Gene/Protein information
Gene sequence:
ATGGGAAATGTTTGTTTCCGGCCTAGTAGAAGCCACGTTTCGCAAGAATTTTCTCAATCAGAATTTTCCGCAGCCAGTCCAGTCAGGACATCTGAACGCCCCTCGGATGCATCACTAGATGCTGGGCTAGAAAGCTCGAGTGCTTGTCACAGAAGCGGCCTGCGCGGTCCTGCGAAGCATTCCATGCTCAGTTTAGAAGAAATTGGCCTAGTCGGTGCTGCGCGCTGGCCAGATGATGCGCCGGGCTTAAATATTTCCAACAAAAGCAATACTCAAGAAAATAAGCGATACTGTGAAAGCTTATATCAAGCAGCACGAATTGCTGGTGGCTCCATAGCGTCTGGCAGAGTTACTAGTTTCGATGGGCTTTGGCGAAACGCAACAAAATGGCGCTTATCTAGAATTCTTTCGGGCGATGCGTCAAAAATCGACTTCGCTACTGTTCGCATGCCCAATACCAGATTCGTAACTTCTTTGAGGCGACCGTATCACTCAGTAATTGAGCGAGTTAGAAATCATTCTGATGCAAATTCGGAAATATACGAAGGAGAATATCTAGGCGGAATTGAGACCAAGGTCTATCGTCAGCATGGCACGATTTCAAGTACAACTATTCCGATGACGATAGTAAGTGCAGTAGCGGATGACGATGATATACATGAAAGGTTAAAGAGCCTGCCAAAGAATGAGCGGCGGCACCTGAAAGATTTGATGGCGGCGTCACACCCTAACATGATCACACACACTGATGCAGTATATCTTCCAATGATCAAGGATCATTTAGAATCATTATATTTGCAAGCGATAGACCCTTCGCTTGAGCAGCACGAGGCCCTCGAGTTGATCGCTCGGATACACTGGTGGGCTGCAAGTGCAGCACCAGATAGGCGTGGCAGTGCTGCCAAAGCAGAGTTCGCCGCAAGATCAATCGCGTTCGCTCATGGTATTGAACTACCGCCATTCGAGCATGGTGCAGTTCCTGATATTGAAGCAATGCTCAGATCTGAAGAGCAATTTGTAGAAGATTACCCTAACCTTTTTGAGCGGCCCCCTCAGTAA
Protein sequence:
MGNVCFRPSRSHVSQEFSQSEFSAASPVRTSERPSDASLDAGLESSSACHRSGLRGPAKHSMLSLEEIGLVGAARWPDDAPGLNISNKSNTQENKRYCESLYQAARIAGGSIASGRVTSFDGLWRNATKWRLSRILSGDASKIDFATVRMPNTRFVTSLRRPYHSVIERVRNHSDANSEIYEGEYLGGIETKVYRQHGTISSTTIPMTIVSAVADDDDIHERLKSLPKNERRHLKDLMAASHPNMITHTDAVYLPMIKDHLESLYLQAIDPSLEQHEALELIARIHWWAASAAPDRRGSAAKAEFAARSIAFAHGIELPPFEHGAVPDIEAMLRSEEQFVEDYPNLFERPPQ
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 39131.8 | 352 | 6.21 | -0.487 | 57.42 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: Phaseolus vulgaris | Disease name: Halo blight of bean |
| Host classification: Eudicots | NCBI Species: 3885 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
GmNDR1a
|
Glycine max (related: Soybean)
|
MAPKHDNCCSRCIGFLIAIGLTALFLWLSLRVDEPKCYLDYIYVPALNKTLNSSSNSTHNKNATIVFALKLANENKDKGIQYDDVLLSFRVFESVNTTRPLGNATVERFYQGHKKKATKRGNFTVGGGGGNLTAALDGKVWYRVDYATAVKYKIIFWYTKRHRLWGGANVEIGELGTKVNRKAVRLGGKNPVVIESGASKLSGRYRAPLLLPFAYLLACGLS
|
||
|
GmNDR1b
|
Glycine max (related: Soybean)
|
MAAEHDSCCSRCVTFLITIGLTALFLWLSLRVDEPKCYLDYIYVPALNKTLNSNSTHNKNTTILFALKLTNGNKDKGIQYDDVLLSFRVFESVNLTRPLGNATVQRFYQGHQKKATKHGNFSGGGGNLTAAVAGRMWYRVDYATAVKYKILFWYTKRHRLWGGANVEIGDSGMKVYRKAVRLGGKNPVVIESGASKLSGRYRALLLSLLLPFCGLWV
|
External Links
Interpro: IPR008798,IPR036231
Pfam: PF05394
SMART:
KEGG: psp:PSPPH_A0120
PRINTS: