Effector profile
| PlantPEAD ID: PlantPEAD00144 | Uniprot ID: Q4ZYH0 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. maculicola | Other name: |
| Gene name: AvrRPM1 | NCBI Gene ID: CP000075 | |
| Entry name: Q4ZYH0_PSEU2 | Protein name: Type III effector protein AvrRpm1 | |
| DOI: 10.1016/S0092-8674(02)00661-X; 10.1111/j.1365-313X.2008.03716.x | ||
Gene/Protein information
Gene sequence:
ATGGGCTGTGTATCGAGTACGTCAAGAAGCACTGGATATTATTCCGGTTACGAAAGCCATGAGGAACCCAGGGCGGCAAGCAGACCGACGAACAGCGATGATCGCGGCTACGAAACTGATTCAGAGCCATCCAGTGGCAACTTGATACCCAATGCGAGGAGCGTGTATAGCGAATCTGTTTTGTGGCACGGTACATCCATGCAATCAAAAATAGACTTGAGAAGCAAAGGGTTCGATGCAGGTAGAAAAACTGGCGGCGCTACTGCAGGTGGCAACGCAAATATGTTTATGAACTTGAGTAGGGAGGCTCAATCTGAAACCAGACGACATCATTATTTGTCTTCATCCCAAAAAGAAGCCAAGGACTTTGCCATGTTTGCTGACACGAGTAATCCCACACTGGTACGCACTATCGGCGTCAGAAACAACTTAAGCCTGATAACCGACCCCAGGACCGGCGGCACCGCACTCATGACAGATCAATCGATTCCGCGCAAATTTGTGCTCGGATCAAAAAGCAGTGCTCCTGGAGAAAATGCGAAAGTCTTCAGGGATGAAATGCGTGCGGCAGGACACAATGTGTCGACAAAGCAAGCCGGCGAACTGCTCAGAGAAGTCCAGTCTGATTCAGACGATGACAACTTCCCTGACCCCGATGACTTTATCATGAGCCGCTTTACTGGATAA
Protein sequence:
MGCVSSTSRSTGYYSGYESHEEPRAASRPTNSDDRGYETDSEPSSGNLIPNARSVYSESVLWHGTSMQSKIDLRSKGFDAGRKTGGATAGGNANMFMNLSREAQSETRRHHYLSSSQKEAKDFAMFADTSNPTLVRTIGVRNNLSLITDPRTGGTALMTDQSIPRKFVLGSKSSAPGENAKVFRDEMRAAGHNVSTKQAGELLREVQSDSDDDNFPDPDDFIMSRFTG
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 24839.1 | 228 | 5.98 | -0.818 | 46.05 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
Q42484
|
Disease resistance protein RPS2
|
RPS2
|
Arabidopsis thaliana (related: thale cress)
|
MDFISSLIVGCAQVLCESMNMAERRGHKTDLRQAITDLETAIGDLKAIRDDLTLRIQQDGLEGRSCSNRAREWLSAVQVTETKTALLLVRFRRREQRTRMRRRYLSCFGCADYKLCKKVSAILKSIGELRERSEAIKTDGGSIQVTCREIPIKSVVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQSINNELITKGHQYDVLIWVQMSREFGECTIQQAVGARLGLSWDEKETGENRALKIYRALRQKRFLLLLDDVWEEIDLEKTGVPRPDRENKCKVMFTTRSIALCNNMGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGAMAHRETEEEWIHASEVLTRFPAEMKGMNYVFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIYKGYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEFGALHKHIQHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNVSWVQKLPKLEVIELFDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQKVETLVITNCPRVKKLPFQERRTQMNLPTVYCEEKWWKALEKDQPNEELCYLPRFVPN
|
External Links
Interpro:
Pfam:
SMART:
KEGG: psb:Psyr_0738
PRINTS: