Effector profile
| PlantPEAD ID: PlantPEAD00232 | Uniprot ID: A5CLR7 | Source: Article |
| Localization: Apoplastic(Exp) | Pathogen taxonomy ID: 28447 | Pathogen type: Bacteria |
| Species: Clavibacter michiganensis | Strain: subsp. michiganensis strain NCPPB 382 | Other name: |
| Gene name: Pat-1 | NCBI Gene ID: AM711866 | |
| Entry name: A5CLR7_CLAM3 | Protein name: Pat-1 protein | |
| DOI: 10.3389/fpls.2022.888290 | ||
Gene/Protein information
Gene sequence:
ATGCAGTTCATGTCGCGCATAAACAGGATATTGTTCGTCGCTGTAGTCAGTCTTCTCAGCGTTCTCGGTTGCTGTGTCGCCGCCGCACCAGCCCAGGCTGTAGACCGTATAGCCCGTGTTTCGTTGCCTGTACGGGCGGGTACTCATCTCATCTTCAGCGACAGTCAAGGTCCTGCTCGTTCGGCGGACTACGACTGCACGGCTGGGGCTGTGCTGACGGGGTCGGGGATCCTCTCGCGAATCAGCCCATATCAACGTGCTGTCCGATATGTCGTTACCGCGAAGCATTGCGGCGGTCGTGGTGCGCATGTGCGCGTCGGTGACGTGCAAGTCGGCTCGGTCATTTGGGAATCGTCAGACGCCGATCTCTCGATTGTCCGGATCGAGCCCTTGCAGACGACCAGAAGAAGTTGTTATCCGACTTCGGCCGGCATACGCTGTACTCTCGTCAATGACTACGAGCCTCGGGCTAGCGGTGAGGTCTTCGGCGCAAGGAACCGATCAGGCCAGGAGTCATCCGTGCAGGTAGCCGGAACCAAAGTCCCGGCTGATCGAGAGATTTTCTGCACTAGCGGGGCAATAACCGGAATTCTGTGTAATTGGGTATCAGCTCCACCGCCTCGAGGGCTGGAAATAGGAAGTCACCAAGTCGTAGCGGAGACCTTTTCAGCTGCGACGAGGCAAGGGGACTCGGGGGGGCCCGTTGTCAGCAGGGACATGAAAATCATCGGTGTAATATGCGACGGTGGGTTGCCAGGGTCTGGAGACGATACCTATATGAGCTACCTTCCGATTTCGGTGCTTTTCCGCGAGCAACCGTATTACATATTAGCGACCTCCTGA
Protein sequence:
MQFMSRINRILFVAVVSLLSVLGCCVAAAPAQAVDRIARVSLPVRAGTHLIFSDSQGPARSADYDCTAGAVLTGSGILSRISPYQRAVRYVVTAKHCGGRGAHVRVGDVQVGSVIWESSDADLSIVRIEPLQTTRRSCYPTSAGIRCTLVNDYEPRASGEVFGARNRSGQESSVQVAGTKVPADREIFCTSGAITGILCNWVSAPPPRGLEIGSHQVVAETFSAATRQGDSGGPVVSRDMKIIGVICDGGLPGSGDDTYMSYLPISVLFREQPYYILATS
Loading ...
Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 29656.8 | 280 | 8.39 | 0.108 | 46.86 |
Plant infestation information
| Experimental plant: Solanum lycopersicum (related: tomato) | |
| Susceptible plant: Solanum lycopersicum | Disease name: Bacterial canker |
| Host classification: Eudicots | NCBI Species: 4081 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR009003,IPR043504,IPR033116
Pfam: PF13365
SMART:
KEGG: cmi:pCM2_0054
PRINTS: