Effector profile
| PlantPEAD ID: PlantPEAD00249 | Uniprot ID: C0LF23 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 67593 | Pathogen type: Oomycota |
| Species: Phytophthora sojae | Strain: race 2 strain P6497 | Other name: Phytophthora megasperma f. sp. glycines |
| Gene name: Avr3c | NCBI Gene ID: FJ705360 | |
| Entry name: C0LF23_PHYSO | Protein name: RxLR effector protein | |
| DOI: 10.1371/journal.pone.0005556 | ||
Gene/Protein information
Gene sequence:
ATGCGCGTGTGCTCCGTCCTCCTAGTTGCTGCAGCTGCTCTCATCGCGACCAGTAATGCTGTTGAGCCTTCCGCCACGTCAACCGTTGAGGTTGCTGAGGTTCAAGCGCGTGGTGCAGACAAACGGTTCCTTCGTAGCCTCCAGACTGAGGAAGAGCAAGGAGACAGCGATGTCAACGAGGCAGAAGACGGTAGTGAAGAGAGAGGACTATTCGCCTGGATCAAAAACGCAGTGACTGGCGATGTTCTTCTGGCGAAGGCGAATAAAGGCGACTTCGAGATGCAGACCAAGCTCTTCAAAAAGTGGATAGAAGAAAAACCTAAAGTCCGACAAAACGCGATCGCCAAGATCATGAGGGATGGAGGACGCAAGAAATACGATACGGTGTTGACGGCGTGGAAGTACCACGATAAAAGAACCGCCAATGGTATCGGCATCCGTGGCGCTACCGATGATGTTGATGAACTGCTTCCAGGAACTCTCATCTACAGGGCAGCTGCCGGAAATCAGGGCGCCCAGAGCGCACTATTCAGCATGTGGATCGGCGCTGAAAAGAAAACTTTGGACACTGCGCGCATACTCCTCTCCAAATCTGAATTGCCGGCCAAAGAGTATAAGAGACTAAACAAAGCGTGGGTGCAATACCGAAGGAAACACAAGTAA
Protein sequence:
MRVCSVLLVAAAALIATSNAVEPSATSTVEVAEVQARGADKRFLRSLQTEEEQGDSDVNEAEDGSEERGLFAWIKNAVTGDVLLAKANKGDFEMQTKLFKKWIEEKPKVRQNAIAKIMRDGGRKKYDTVLTAWKYHDKRTANGIGIRGATDDVDELLPGTLIYRAAAGNQGAQSALFSMWIGAEKKTLDTARILLSKSELPAKEYKRLNKAWVQYRRKHK
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 24441.9 | 220 | 9.38 | -0.499 | 32.25 |
Plant infestation information
| Experimental plant: Glycine max (related: soybean) | |
| Susceptible plant: Glycine max | Disease name: Root and stem rot of soybean |
| Host classification: Eudicots | NCBI Species: 3847 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR031825
Pfam: PF16810
SMART:
KEGG: psoj:PHYSODRAFT_286129
PRINTS: