Effector profile
PlantPEAD ID: PlantPEAD00279 Uniprot ID: Q8XZN9 Source: Database
Localization: Apoplastic(Pre) Pathogen taxonomy ID: 305 Pathogen type: Bacteria
Species: Ralstonia solanacearum Strain: GMI1000 Other name: Ralstonia nicotianae, Pseudomonas solanacearum
Gene name: RipG6 NCBI Gene ID: AL646052
Entry name: Q8XZN9_RALN1 Protein name: Type III effector protein gala6
DOI: 10.1093/nar/gkab1037
Gene/Protein information
Gene sequence:
ATGGTGTCGCGCATTCCCACCGGCAACCGCGGGCAAGGCAACGGAATCGAGCAATCTGCCTCGTCGCACGCCACCGAGGCTACGCCCTGGCTGGGCGTGAACCTGCCGTATGGGCACTGGCTGCCTTCTTCTGCCCGCTCGGTGGTCTCGCGGGCCTCGTCGCTCCTGGGCGGCCTGGCGAACTTCAGGTGGGGCGGCCGGCCGGCAAGCGCCCGGCCCGCGCCGAACATTCGGTCTGCCGCCATCGCGCCCGCCCAGCAGACGCTGCCGCCCGAGCTGTGGCAGCAGATCGCCACCCTTGCCGGAGCGCGGCCCCGGCGTGCCATGCGGGAGGTCAGCCTCGAACTGCGGAATGCCTCGCGGGCGGTCGTGACGCACCTGACCATCAGCGACCCGGCGATGTTCCGCCAACTGAGCCTGTACCCGGCGCTCAAGAGCGTGCGCTTCAAGGGGGAGCTCACGCTCGAGGCGCTGAAAGCCTTGCCGCCAGAACTGGAGCACCTGGAGATCGGCCGCTGCACGGGCAGCGCCATCTCGGCCGAGGGGCTGGCGCATCTCGCCTCGATGCCGCTCAAGTCGCTCAACCTGAACGGCATCGAAATCGGTGTCGAGGGCGCGCGCACGCTCGCGGCCAGCAAGTCGCTCGTCTCGCTCAGCCTGATCGGCTGCGGGATCGGCGACCGGGCCGCCCAGGCGCTGGTGGCCAGCCGGTCGATCCAGTGTCTTGACCTGAGCGTGAACAGGATCGGACGCGACGGCGCGCAGGCGCTGGCCGGCGCGCCACTGGTCTCGCTCAATCTGCACAACAACGAGATCGGCAACGAGGGCGCGCGGGTGCTGGCGACAAGCCGGACGCTGACGTCGCTCGACGTGAGCAATAACGGCGTCGGCAATGCCGGGGCGGAGGCTTTTGCGGGCAACACCGTGTTGAAGCAGCTCAGCCTGGCAGGCGGCATGATCAGCGGGGACGGTGCTCAAGCGCTGGCGGACAACAAGTCGCTCACCGATCTCGACCTGAGCAACAACCGCCTGGGCGACGCAGGCGCGCAGGCGCTGGCGGACAGCGAGTCATTCGTCTCGCTCAAGCTGGGGGGCAACGAGATCGGCGCCGATGGCGCAGAGGCGCTGGCGCGCAATGTCGTGCTCCAATCTCTCAATCTGAGCTACAACCCCATCGGCTTCTGGGGCGTCAACGCTCTAGGTAGGGCCAAGCTGCGCAAGCTCGATCTGTGCGCCTGCGCCATCGATTCGGACGGTGCGAGCGCCTTGGCGCGCAATACCTCGCTCGCCTCGCTCTACCTCGGCAGTAACCGGATCGGCGATGACGGCGCGCGGGCACTGGCAAAAAACAGCACGCTGACCCTGCTCAACCTGAGCGGGAACAACATTCATGCCGTCGGTGCCCAGGCGCTGGCAAGCAATGACTCGCTGATCACGCTCGACCTGAGCCGCAACGGGATCGGCGATGACGGCACCGCGGCACTGGCGTGTCATCCACGGCTGACTTCGCTTAACCTGAGCCGTAACCAGATCGGATCTACCGGTGCGCAGCAATTGGCGAAAAGCGCCACGCTGGCCGAGCTCGACCTGAGCGAGAACCGCATCGGTCCCGAGGGCGCTGAGGCGCTGGCCCGCAGTACGGTGCTCACCACGCTCAACGTGAGCTACAACGCCATTGGAGAGGCCGGTGCGCGGGCGCTGGCCGAGAGCGTTTCGCTGACCTCGCTCGACGCGCGCCGGAACGGGATCGGCGAGGACGGCGCCAAGGTGCTGGAGGCCAATACCCGGATCACGGGCACGCCGCAGAACCCGAATTTCCTGGCGGAGGATGTGCCGAGGCCGGATGTGCGGTGGAGGGACTGA
Protein sequence:
MVSRIPTGNRGQGNGIEQSASSHATEATPWLGVNLPYGHWLPSSARSVVSRASSLLGGLANFRWGGRPASARPAPNIRSAAIAPAQQTLPPELWQQIATLAGARPRRAMREVSLELRNASRAVVTHLTISDPAMFRQLSLYPALKSVRFKGELTLEALKALPPELEHLEIGRCTGSAISAEGLAHLASMPLKSLNLNGIEIGVEGARTLAASKSLVSLSLIGCGIGDRAAQALVASRSIQCLDLSVNRIGRDGAQALAGAPLVSLNLHNNEIGNEGARVLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNLSYNPIGFWGVNALGRAKLRKLDLCACAIDSDGASALARNTSLASLYLGSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAALACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLNVSYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVLEANTRITGTPQNPNFLAEDVPRPDVRWRD
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
64197.4 620 7.67 -0.059 34.27
Plant infestation information
Experimental plant:
Susceptible plant: Solanum melongena, Solanum lycopersicum, Solanum tuberosum Disease name: Bacterial wilt
Host classification: Eudicots NCBI Species: 4111, 4081, 4113
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
Q39255
SKP1-like protein 1A
SKP1A
Arabidopsis thaliana (related: thale cress)
MSAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE
Q9FHW7
SKP1-like protein 1B
SKP1B
Arabidopsis thaliana (related: thale cress)
MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Q9M1X5
SKP1-like protein 13
ASK13
Arabidopsis thaliana (related: thale cress)
MSKMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE