Effector profile
| PlantPEAD ID: PlantPEAD00298 | Uniprot ID: D0MZL5 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 4787 | Pathogen type: Oomycota |
| Species: Phytophthora infestans | Strain: NL-88069 | Other name: Potato late blight agent, Botrytis infestan |
| Gene name: PexRD28 | NCBI Gene ID: XM_002906231 | |
| Entry name: RD28_PHYIT | Protein name: RxLR effector protein PITG_03192 | |
| DOI: 10.1371/journal.ppat.1003670; 10.1371/journal.ppat.1003670 | ||
Gene/Protein information
Gene sequence:
ATGCGTGTAGGCTTCGTTTTCGCCCTGCTCGTCGTCAGTGTGATCGTGTGCTTCAATGGGCTCACCAGCGCCGAGAGCACCGTCGTCATGAATAACCGGAATCCCGACTCCATCAACGTCCCCATAAGCGATGATATCACAAGCCGCAACCTCAGGGCGAGCGGTGAAGAGAGAGCCTACGCCTTTGTGGACAAGATCAAGAGTCTTTTTAGCAGGCCTGGCATCAGCCAGAAAGTCGAGAGTCTGCAGAAGAATCCCGCCATGGTCAAGAACTTGGAGAAGGCTGCGTTAAGCCAGAAGGGCTCCAGCAAGGTCCGCGACTGGTTCATGCATATGTACAACAACAGCTCCAAGAGAGACAAGTTCTTCATTCTCGCGACCCTCGTCATGTTCCCTATCGGCGTATGGGCAGTTGTTACTAATTATAGGAGGTAG
Protein sequence:
MRVGFVFALLVVSVIVCFNGLTSAESTVVMNNRNPDSINVPISDDITSRNLRASGEERAYAFVDKIKSLFSRPGISQKVESLQKNPAMVKNLEKAALSQKGSSKVRDWFMHMYNNSSKRDKFFILATLVMFPIGVWAVVTNYRR
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 16210.8 | 144 | 10.06 | -0.032 | 35.74 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Solanum lycopersicum, Solanum tuberosum | Disease name: Late blight |
| Host classification: Eudicots | NCBI Species: 4081, 4113 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
U5Q2S0
|
Putative membrane bound NAC transcription factor 1
|
StNTP1
|
Solanum tuberosum (related: related: potato)
|
MMAVLPGENPIAVLPVDKQMGIPPLNTLPVGYRFRPTDEELVNHYLRLKINGADSQVSVIREVDICKLEPWDLPDLSVVESHDNEWFFFCPKDRKYQNGQRLNRATERGYWKATGKDRNIVTKKGAKIGMKKTLVYYIGRAPEGKRTHWVIHEYRATEKSLDGSHPGQGAFVLCRLFRKNDLKQDEHVENSNLDAEQNASVDKSPAEDELSEAATPLMVIQPLSDCDKSYAAKFSKGEMYGKQIPIESHSNSCIADDTEDQMLDITSIPPVQDLEKELGNFYDPSSQPDWKIFSPLHSQMQVELGSSYLQAPFNNDICGYQKDVQFPYGTNALEINDFLNSILVNSDELSCEDSGQELASHHIDTKNYSITGPMIKDSGSCSESEAEVTQGQVDPGFFDPEVLWDNFDREAAVKREVNSLEHTVLKARSPLGPSYDGNDYAVGNLGFFQNTYPGHYGYPASIGGSQVPNFLKVEQSGVRNNVVSTESGSGTGIKLRTRQMHNQPDDTQSRPQGTAHRRIRLGVKMQVGPVECRMRSVSSQGAEIHQAVAEGEKACDEHSSTTSDNTTHKDLEGVVGETDELSTRVKDADDSPVQESLDVSLKTATKLSSSSHVYMSKVLVVASLLVVFIGVWGCFRLCV
|
|
U5Q2T9
|
Putative membrane bound NAC transcription factor 2
|
StNTP2
|
Solanum tuberosum (related: related: potato)
|
MKLLMDSSAPSSSSSPCKEMKVSECFGENSVFPPGFRFHPTDEELVLYYLKRKICRRRILLDAIAETDVYKWEPEDLPDLSKLKTGDRQWFFFSPRDRKYPNGARSNRASKHGYWKATGKDRIITCNSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTMDEEELKRCQNAQDYYALYKVFKKSGPGPKNGEQYGAPFREEDWVDDECLNAKVPVQPESPRHQESSAKNINVVPAPDDAIEELLKRPFTVDNNFALEQFVQEEDTESTLLNQSSREVDLYNHCAVAGPSCQQYNARVSFDLTESGTSPLHLHEVPEVSSAPVNPVKPPYVVEEDFLEDFLEMDDLLVAEPNVQNFDHETPNGQVFDNPAGNLETLQFDDFDGLSEFDLYHDAPSLLDNVGTPTVGQIAEPYMNNFVNGITYPDSTTYMSTFQNDMMNNQQMRLNHENQINNQFWMHDERFGVFNPIEGDQSVVDQASSGVVNDNNMANYPMGANQNLAKKDDGTQSWFSSNLWAFVDSIPTTPASAAESALVVKRAFERMSSFSRMKLNVGNMNVAAGNTSATSSSSGKAKYGLCCISLLGVLCAFLWVLIGTSAKIVGT
|
External Links
Interpro:
Pfam:
SMART:
KEGG: pif:PITG_03192
PRINTS: