Effector profile
PlantPEAD ID: PlantPEAD00303 Uniprot ID: Q886L1 Source: Article
Localization: Cytoplasmic(Pre) Pathogen taxonomy ID: 317 Pathogen type: Bacteria
Species: Pseudomonas syringae Strain: pv. tomato strain ATCC BAA-871 / DC3000 Other name: Pseudomonas syringae tomato
Gene name: HopAF1 NCBI Gene ID: AE016853
Entry name: Q886L1_PSESM Protein name: Type III effector HopAF1
DOI: 10.1126/science.1203659
Gene/Protein information
Gene sequence:
ATGGGGCTATGTATTTCAAAACACTCTGGTAGCAGTTACAGCTACAGTGATAGCGACCGCTGGCAAGTGCCTGCATGCCCTCCAAACGCCAGGTCTGTATCCAGTCATCAAACAGCATCTGCGAGTGACATCGCATCAGGCGATGTGGATGAACGTCCTGCAACGTTTTCTCATTTTCAACTTGCGCGGTGCGGTGGAGAGTACACGCTTAGCATGGTTTCTGCAGCGGCTTATCAAGCAGAAAGACGGCATCGCGGTAATTTAATAAAAGATCGTAGTCAATCCATACTCCCATGGGTCCAGGTATATCATTCTAAAAAAGGTTTGGATTACAGCTTCCAGATCGACAGAACTACGACTGTTAAAGTGGCTGGATTCAACTGCTCTATCCCCAATAACAGAGGGACTCGGCATTTATACAGCGCTGGTACGAGTCAGACAAACATGCCTGTCATCGCAGACAACATGAGCGCATGCATTGCTGTCGCGTGTGCGGCGGAAAACGTGGATGCTGGCACGGGTGAACGTAGGCCGGGGGCGAAAGTTCGCGTATTCCATCTACTCCCTTTTCGACGCGAAGACCTTGTGCCAGAAGAAGTTTTAGCTTCTGTGCGCGATTATCTGCGAACGACCAAAGAACAGGGGCTAACAATGCGCGTAGCTATGCATGGAGGGAATACAGAGGGTGATTTCTCAGTCAGCACTGCGCAGGCATTGAAAGGCCTGTTTGCTAATGAAGGGATCCCGCTTGAATTTGACGAGACCTGTGCAAACCGAACGTCTGAAACACTGCTTGGTGCCGTTATCTTAGATGACAACTCGACTCATTTCATAAAACATCTGGTCGCACAATAA
Protein sequence:
MGLCISKHSGSSYSYSDSDRWQVPACPPNARSVSSHQTASASDIASGDVDERPATFSHFQLARCGGEYTLSMVSAAAYQAERRHRGNLIKDRSQSILPWVQVYHSKKGLDYSFQIDRTTTVKVAGFNCSIPNNRGTRHLYSAGTSQTNMPVIADNMSACIAVACAAENVDAGTGERRPGAKVRVFHLLPFRREDLVPEEVLASVRDYLRTTKEQGLTMRVAMHGGNTEGDFSVSTAQALKGLFANEGIPLEFDETCANRTSETLLGAVILDDNSTHFIKHLVAQ
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
30960.7 284 6.79 -0.346 41.57
Plant infestation information
Experimental plant: Arabidopsis thaliana (related: thale cress)
Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana Disease name: Bacterial speck
Host classification: Eudicots NCBI Species: 4081, 3702
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
Q7XA67
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
MTN2
Arabidopsis thaliana (related: thale cress)
MEGVMGQVEKRPISTIVFIVAMQKEAQPLINRLRLVEEVNTPFPKEVTWIMFKGMYKDLNINIVCPGKDSTLGVESVGTVPASLVTYASILAIQPDLIINAGTAGGFKAKGACISDVYVVSTVAFHDRRIPVPVLDIYGVGMRNTFPTPNLIKELNLKVGRLSTGDSMDMSPHDEESITANDATVKDMEGAAVAYVADIFKVPTILIKGVTDIVDGNRPTSEEFLENLAAVTAKLDESLTKVIDFISGKCLSDL
Q9T0I8
5'-methylthioadenosine nucleosidase
MTN1
Arabidopsis thaliana (related: thale cress)
MAPHGDGLSDIEEPEVDAQSEILRPISSVVFVIAMQAEALPLVNKFGLSETTDSPLGKGLPWVLYHGVHKDLRINVVCPGRDAALGIDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIPMFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLTVVTAALEGTATKVINFINGRNLSDL