Effector profile
| PlantPEAD ID: PlantPEAD00329 | Uniprot ID: G2X444 | Source: Article |
| Localization: Apoplastic(Pre) | Pathogen taxonomy ID: 27337 | Pathogen type: Fungi |
| Species: Verticillium dahliae | Strain: strain VdLs.17 / ATCC MYA-4575 / FGSC 10137 | Other name: Verticillium wilt |
| Gene name: Vd5LysM | NCBI Gene ID: XM_009654385 | |
| Entry name: G2X444_VERDV | Protein name: LysM domain-containing protein | |
| DOI: 10.1111/mpp.12520 | ||
Gene/Protein information
Gene sequence:
ATGATCTACAATGAAAGTCTGCCCGACAACCTCCCGTCACTTTGCTCTAAGGCTCTTCTGGCTGACGTGCCCTGTGACCGCCTCGTGCGAGATCTTCGCCCAGATTTCTTTTACCGTCCAGCGTCTCTGGAGCGTATGTGTACCTCGGGCTGCGCCGCAGCATTGTCTTCATGGACATCGTCGGTCCGGTCCGCGTGCGGCAAGAATGTGAGCGTCCCCACCGACTTTGACCTCCTCGCATCGCCAGTGGTGATTCCGGCCACACTCGAGCACACATTTGAGTTTACGTGTCTGCGGGAGAATAATAAGTTTTGTGGCCCTGTTGCGGCCTTGGCTGCTGTCTTCACAGACCCTGGAGTATCGCCTTTCAACTATCTCAGTGAAGCGCCGGAGGGGACCACAGATCCCGGTCGCTGTGACAGCTGCATCGCAGCCAGGCTTCGTATGCGCGCAGGATCGCCCTACTTCGACGGCCCCATCGTGGCAAGCGAATCGCTCTACCAGAGACTTACGTCGAGCTGTGGCATCACGGGCAAACCTGTCACCACCACAACTATTGACTACTCCATCAGCGAGCCTGAACCTACGGAAGATTCTTGTGACGGAACGCAATACACGATCCAAAATACTGATGATTGTTACAGCATATCCAAGGCCCAGGGTGTTGCCACAGCTTGGCTTTTGGCAGACAATGGCCTCGCCGCATACTGTGCTGACTTTCCCACGTCAGGCAGTCTCTGTATTGCTAACAAGTGTGATACCGTCACTGTTGGAGTCAACCAGACATGTATCGCTATCGCCAACTCTGCAGGAATAACAGTAACCCAGCTCAAGGCCTGGAACCAGGTCATCAATCCTGTGTGCTCCAACATTGGCATGATGAACGGTACCACGCTCTGCATCAGTCCTCCAGGACCTCGGCTGCCTCTGCCTGGGACTACCGATATTCCACCACTGGTCCCAACCACGGCCGCACCTGTGCCAACAGACGCCGCCGCGGGGTCCAACAAGCCATGCAGCCGCTGGTACAACGTCGAAGCGGGCGACTACTGTAATCTGGTGATCCTCAAGTTCGCCATCTCGCTGGACGACTTCCTCTTTCTCAACCCCGGCATCAATGCCAACTGCACCAACTTGTATGCAAAAGAAAGCTACTGTGTACATCCAGTGGGAGACATCAACACCTACGCTGGCCGCCCTGGACATGTCTCTATCACAATCGATCCCAATGCGACTTTCACCGGCATTCCCTTCACCATGCTTCCTAATGCGACCGTAAAAGGCTATTCACGGCCATACACCCCTGCGCCGCTGGCCAAAGGAGTCCGCGAAGACTGTGTGCACTATTTCAAGGGCGATGACTACCAGTTTCCTCCAGACCAGCTTGGGTACTGGAAGAGCAATTGCGAACTCGCCGCCCGCAACTATGGCGCCGACAACGACAACTTCGTCGCCTGGAACGCATTGGGTACCAATGTCACCGACCCTTCCTGCTCTTTTGTACCTGGTGGGAGGTACTGCGGCTCCTGGAATTCGCAGGTTGTCCGCACCATCACTGAGACTGAGCCGGCGACTGCAACCACCGGCGATGGGGGCCCGACTCCTCCTGCGCCGACACATTCAGGTCAGCCTCAAGACTGTGATACTTGGCATGTCGTTTCCTCAGGCGACTCTTGCCAGTCAGTGGCAGACGACGCCGGCATCTCACGGGACCAGTTTCACGACTGGAACCCGGCCGTCGGCCGTGACTGCTCAACCAACTTCTGGCTGGGCCAGGCTTACTGCGTCGGCGTTTCTGAAGACATGGGCGACATGTCCACAGTGGCATCCTCCACGACGTCGTCCGTGACGCCCGGCCCTTCTAAGCCGGAACCACCAGGGCCAACGCATACCGGTCAGCCGAGCGATTGCGACGAGTGGGATGTTGTGGAAACGGGCGATACCTGTGGCTCACTCGCTGAGAGTAACGACATTTCGTTGAGTCAATTCTTTGACTGGAATCCAGCAGTGAGCCGCGACTGTGTGGCCAACTTCTGGATTGGCCAGGCATATTGTATTGGAGTTTCATCGTGA
Protein sequence:
MIYNESLPDNLPSLCSKALLADVPCDRLVRDLRPDFFYRPASLERMCTSGCAAALSSWTSSVRSACGKNVSVPTDFDLLASPVVIPATLEHTFEFTCLRENNKFCGPVAALAAVFTDPGVSPFNYLSEAPEGTTDPGRCDSCIAARLRMRAGSPYFDGPIVASESLYQRLTSSCGITGKPVTTTTIDYSISEPEPTEDSCDGTQYTIQNTDDCYSISKAQGVATAWLLADNGLAAYCADFPTSGSLCIANKCDTVTVGVNQTCIAIANSAGITVTQLKAWNQVINPVCSNIGMMNGTTLCISPPGPRLPLPGTTDIPPLVPTTAAPVPTDAAAGSNKPCSRWYNVEAGDYCNLVILKFAISLDDFLFLNPGINANCTNLYAKESYCVHPVGDINTYAGRPGHVSITIDPNATFTGIPFTMLPNATVKGYSRPYTPAPLAKGVREDCVHYFKGDDYQFPPDQLGYWKSNCELAARNYGADNDNFVAWNALGTNVTDPSCSFVPGGRYCGSWNSQVVRTITETEPATATTGDGGPTPPAPTHSGQPQDCDTWHVVSSGDSCQSVADDAGISRDQFHDWNPAVGRDCSTNFWLGQAYCVGVSEDMGDMSTVASSTTSSVTPGPSKPEPPGPTHTGQPSDCDEWDVVETGDTCGSLAESNDISLSQFFDWNPAVSRDCVANFWIGQAYCIGVSS
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 73453.8 | 690 | 4.41 | -0.181 | 39 |
Plant infestation information
| Experimental plant: Solanum lycopersicum (related: tomato) | |
| Susceptible plant: Gossypium hirsutum, Lactuca sativa, Solanum lycopersicum | Disease name: Vascular wilt |
| Host classification: Eudicots | NCBI Species: 3635, 4236, 4081 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR018392,IPR036779
Pfam: PF01476
SMART: SM00257
KEGG: vda:VDAG_04781
PRINTS: