Effector profile
| PlantPEAD ID: PlantPEAD00341 | Uniprot ID: D2Z000 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 305 | Pathogen type: Bacteria |
| Species: Ralstonia solanacearum | Strain: GMI1000 | Other name: Ralstonia nicotianae, Pseudomonas solanacearum |
| Gene name: Rip61(RipAR) | NCBI Gene ID: AB516343 | |
| Entry name: D2Z000_RALSL | Protein name: Type III effector protein | |
| DOI: 10.1099/mic.0.000495 | ||
Gene/Protein information
Gene sequence:
ATGCCGCCTCCCATCCGGAACGCACGCACCACTCCGCCCAGCTTCGACCCGTCGGCTGCCGGCGATGATCTCCGCGCCACGCCGCCACGAGTGGCCGCCGCCACCCCGACGCACAGAACCGCCCCATCCCAGCTTGCCGGCCTGCCGTCGAGACCGAGGGCGCAACCGCCGCAGCAAGATCCGACACCGACACCATTGGCCCTGCACGGCAACACCCACACCGGATCGGCAACCGGCCGCTTGATCGCCCTTGCCCTTGCGAACCCGGCTGCGAACCGGACGCCAGGCCGCCTTGCAGGCGGCCTGCACCTGCCGTCGATCGACAACGGCAATCCCGTCCTGGCGTCCCTGAACGTCGCCTCCGGAGAACTGGCTGAAATCGGCGCTGCCGCCCTGCTTGCAACCCGCCTGCGCCTGCCATCGATCGCCCTCGACGGCCCGCGGGCGCGCGGGCCGGCCGCAACCCTGCTGGCAGGTCTAGAGCATCGGACGAGAGCACTGTCATTGGCACAGGAGCCGGGCGGCCTGGGCCCAGGCCATCCTCCATTGGCCGTCCTGCCCGACATCGTCGCAGCCGCCTTGGCAAACAGCAACAGCCTGCGCGACTTGCTGGACAGGCACCCTGCAAGCGTGTTGGCGAACCGGTTGCGCGGCGTCGGCCCAGCCCAGCCCGCAGCCGCCCCATCCCTGGGACACGCGCAGCGCGCGGCTCAAATCCTGGAAGGCTGGGCACAGCAATGCCAGCTGCCTCCCAAGACCGTCGATGCATGGCGCCCCGTGCTCAACCAGGAAGAGAGCCGTCCGTTCGTCAGCCTCCTTGCCCGGCTGAACGGCTGCGCATCGTTCCGGCCCGCGCATCGCGCCGAGTCCCTCAAGGAGCTGGGCGGCATCCTGCAGCTGGCCGCGCACAACGATGCCTACCGCGCCCGGTGTTTTGACATCTGCGGCGGCGCCGACGCCAACTGCCACGATAACGTCGACGTCATCTTCGGCAACCTGCGGCTGGCGGCCAGGGACCCGTCGTACCACGGCAACGCCCAGTTGCACGAGGTCCTGAGCTATCACAATCGCTGCATGCCCTGGACGCTGATCGACGACTTCGTGTCGCACCGGTTTGGGCGGGGCGACCAGCTGGAGCGGGCGCTCGCCCTGCGGGTGCGCCTGTCCGACATCCTGCCGATCACGACGCCGGCCATGCTTCACCACGACATCGCCCGCATCGACAATGCGCATGAGCGCGAAGCGCGCGCCTACATCAGCGCCCATCTCGGTACGCAAGAGCACCTGCTGCGCAACCTGTCCAGAAGCCCGGCCTGGCGCCAGTTCCTGGAACAGCAGCGTCCTGTCGAATTCGCCGCCAATACGCTGCTGTGGGAATCCGCGCTGCAGGACGTCATGGCCAAACCGGCCGGCGACAGCGCCATGGCCGATGCGCCGCGAACCGCAAGCACGGCGGCCCCCGGTTCACGCACCGAGGCCCTGGCCCAGGCGCGCGCGATGCCCGGCATCGGCACCGGCCAGGCGTTCCAGCACAGGCAGGAAAACGCCACCGCCATGCTGGCCGAAACGATGACGCGCAAGCTTGTCATGGAGAGCGCGCCGCCGCCGGACGAAACCGGCGCCCATGCCGCGCTGCTCACGGACCCCGACTGGCTGGCCTACCTGCAGAAGGAGCATCCGGAAGACCGCGCCTTCTCACCTGCCGACATGCATGCCGCCGAGCGGCACGACCTGCTGATGCGGCTGACCCGGCAGGAAATCGCCGAGGCGCGCGGCATGGTCCAGCCGCACGCCGGCGCGCCGACGGACCACGGCTGA
Protein sequence:
MPPPIRNARTTPPSFDPSAAGDDLRATPPRVAAATPTHRTAPSQLAGLPSRPRAQPPQQDPTPTPLALHGNTHTGSATGRLIALALANPAANRTPGRLAGGLHLPSIDNGNPVLASLNVASGELAEIGAAALLATRLRLPSIALDGPRARGPAATLLAGLEHRTRALSLAQEPGGLGPGHPPLAVLPDIVAAALANSNSLRDLLDRHPASVLANRLRGVGPAQPAAAPSLGHAQRAAQILEGWAQQCQLPPKTVDAWRPVLNQEESRPFVSLLARLNGCASFRPAHRAESLKELGGILQLAAHNDAYRARCFDICGGADANCHDNVDVIFGNLRLAARDPSYHGNAQLHEVLSYHNRCMPWTLIDDFVSHRFGRGDQLERALALRVRLSDILPITTPAMLHHDIARIDNAHEREARAYISAHLGTQEHLLRNLSRSPAWRQFLEQQRPVEFAANTLLWESALQDVMAKPAGDSAMADAPRTASTAAPGSRTEALAQARAMPGIGTGQAFQHRQENATAMLAETMTRKLVMESAPPPDETGAHAALLTDPDWLAYLQKEHPEDRAFSPADMHAAERHDLLMRLTRQEIAEARGMVQPHAGAPTDHG
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 64667.2 | 605 | 7.17 | -0.326 | 42.27 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Solanum melongena, Solanum lycopersicum, Solanum tuberosum | Disease name: Bacterial wilt |
| Host classification: Eudicots | NCBI Species: 4111, 4081, 4113 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR029487
Pfam: PF14496
SMART:
KEGG:
PRINTS: