Effector profile
| PlantPEAD ID: PlantPEAD00352 | Uniprot ID: A0A0Q0BGR4 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: HopBB1 | NCBI Gene ID: LJRI01000816 | |
| Entry name: A0A0Q0BGR4_PSESX | Protein name: Type III effector HopBB1 | |
| DOI: 10.1016/j.chom.2017.01.003 | ||
Gene/Protein information
Gene sequence:
ATGGGTAATATTTGTGGTACTTCCGGCTCCCATTATGTATATAGTCCGCCAGTAAGCCCTCGACATGTATCGGGTTCGTCCACACCGGTGCACAGTGTAGGCGGTCAAGGCCTAACCTCGGTGTATCAACTTTCCGCTGAGGCACGAGATGATTTTCTTGATCGCTTTGACCCAATGCGAAACCTAGGTCTGAACTCGGAAACGCCGCTTTACAGGACCACGGATACCAGCTGGCGCAATGTTATTGCGCAAATAAGAAATCCTGACGAAGATCCGCGCATCGACCATCTGCTGACAATGGCAGAAGAAATTTACAAGGCATCAAGCACTTTTAGAAAAAGAATGAACGCAGTTGCGGGCGAAGGTGGTGTCACGATAAGGATCGTGCCAGACAGTGAGATCGGCCATTCCTTTGGGCATGCCGCAACAATACCGGCAACTCGGTCTATTGCCTTGACAGAGACAACAGCAAGCAACGTTCAAGGAAGTCACTATCAATCTCTCAATATATTATTGGTTGAACTCTCAAACCTGAGCCGGGCCAATGAAATTGCGGAGATCCGTTCCAGTTTCCAGCAGGGACGAATAGGTCAGCGGCGCGCGGCTCATAACACCGAAAGAGCAGAGTATGGAACGATCGAAGACATGGTCAAATATTTTACGGAGGCTCGACCTGTCATAGAATCACTAGGCTACGGGAATCCGTCGATGTGGTACGCCGCACACGACTACGGCGGCGGAATCGTGCCAGCATACCGATCATTCGAAGATTACTACGCAACAGCGCTTTCAAGCGGCCATACTGACGTTCACCTTAACAACTATTCTCGGTCTGATGAATAG
Protein sequence:
MGNICGTSGSHYVYSPPVSPRHVSGSSTPVHSVGGQGLTSVYQLSAEARDDFLDRFDPMRNLGLNSETPLYRTTDTSWRNVIAQIRNPDEDPRIDHLLTMAEEIYKASSTFRKRMNAVAGEGGVTIRIVPDSEIGHSFGHAATIPATRSIALTETTASNVQGSHYQSLNILLVELSNLSRANEIAEIRSSFQQGRIGQRRAAHNTERAEYGTIEDMVKYFTEARPVIESLGYGNPSMWYAAHDYGGGIVPAYRSFEDYYATALSSGHTDVHLNNYSRSDE
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 30854 | 280 | 5.75 | -0.49 | 54.58 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
Q93Z00
|
Transcription factor TCP14
|
TCP14
|
Arabidopsis thaliana (related: thale cress)
|
MQKPTSSILNVIMDGGDSVGGGGGDDHHRHLHHHHRPTFPFQLLGKHDPDDNHQQQPSPSSSSSLFSLHQHQQLSQSQPQSQSQKSQPQTTQKELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSLPSHFRSAASTFSPNNIFSPAMLQQQQQQQRGGGVGFHHPHLQGRAPTSSLFPGIDNFTPTTSFLNFHNPTKQEGDQDSEELNSEKKRRIQTTSDLHQQQQQHQHDQIGGYTLQSSNSGSTATAAAAQQIPGNFWMVAAAAAAGGGGGNNNQTGGLMTASIGTGGGGGEPVWTFPSINTAAAALYRSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINEDSNNNEGGRSDGGGDHHNTQRHHHHQQQHHHNILSGLNQYGRQVSGDSQASGSLGGGDEEDQQD
|
External Links
Interpro: IPR015226
Pfam: PF09143
SMART:
KEGG:
PRINTS: