Effector profile
| PlantPEAD ID: PlantPEAD00372 | Uniprot ID: Q48BD8 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. phaseolicola (strain 1448A / Race 6) | Other name: Pseudomonas savastanoi pv. phaseolicola |
| Gene name: HopQ1 | NCBI Gene ID: CP000059 | |
| Entry name: Q48BD8_PSE14 | Protein name: Type III effector HopQ1 | |
| DOI: 10.3389/fpls.2018.00978 | ||
Gene/Protein information
Gene sequence:
ATGCATCGTCCTATCACCGCAGGCCATACCACCTCACGTCTCATCCTAGATCAGTTAAAACAAATATCACGTACCCCATCGGAAAGTAGCGTGCAATCAGCACTTTCTCAGCAAGCAAGCATGAGCAGCCCAGTTTTGGAGCGGTCGAAAAGTGCGCCAGCTTTATTGACTGCGGCACAGCGCACGATGCTTGCACAAGTGGGAGCCTGTAACTCTCATCTGACCTCAGACGAAAACATGGCCATCAATGAACTGAGATTACACAAGCCCCGGTTACCTAAGGATACGTGGTTTTTCACTGATCCTAACAAGGACCCGGATGATGTCGTGACCTACACCTTGGGCAAGCAATTGCAGGCTGAGGGCTTTGTGCACATCACGGACGTAGTGGCAACACTGGGTGATGCTGAAGTTCGCTCTCAACGTGCCGAGATGGCCAAAGGCGTGTTCAACAAGCTTGGGTTGCATGACGTGCATGTGTCGCGTGGTCGGGATTACGCGATGAATTCGCTTCAGTCGAAGGAACATGCCAAATTTTTACTGGAAGGTCATGCTTTAAGGGCTGGACCTGGTGAAATACACCGCGACAGCTTGCAGGACATGAGCAGGCGCCTGGCCCGTGCGCCACATGGAGTCGGTATTGTCGTAATTGCAGGCATGAGTGATATCAATGCTCTCATCACTACCTGCCCGGATATGGTGCGCGAACGGGTTGATGACATTACCATCATGGGCGGCGTCGAGCCTTTAAAGGACGCAGATGGTTTTGTACAGCCTGATGCACGCGCTTACAACAATGCGACCGACATGGATGCTGCGCGCAGTCTTTATCGGAAAGCGCAGGAGCTTGGCATTCCACTTCGTATAGTGACAAAGGAGGCGGCCTATAAAACGGCGGTTTCGCCTTCATTTTACGAAGGGATAGCGGGGAGCGGACATCCAGTAGGCCACTACCTGAGAGACGTTCAGAAGAGTGCGTTGAAAGGCCTCTGGGAAGGTATTCAAGCTGGATTGCTTCCCGGGTTGGATGACTCATGGTTCTTTCGGACGTTCATGCCAAATGCACAGATTGAAGCAGCACAACTGGATAAAAATAAAGAGAGTTCGTTTGAAGATATCTGGCCTAAGGTGACGAAGCTAAACCTGTATGATCCTCTGACATTACTGGCCTCAGTGCCAGGGGCGGCAAAACTGCTATTTAAACCAAAAGCTATACACACAGAAGGATTTGGTGTTGTAGAGCAAGTAGGTCCAGATGATGTGACGCATCCAGAGAAAGCAAAGTTATTGATGTCCGCTTTAGCCAAATCTGCGCTTGTCCAGTCGACGGTAGCCCCAGATTGA
Protein sequence:
MHRPITAGHTTSRLILDQLKQISRTPSESSVQSALSQQASMSSPVLERSKSAPALLTAAQRTMLAQVGACNSHLTSDENMAINELRLHKPRLPKDTWFFTDPNKDPDDVVTYTLGKQLQAEGFVHITDVVATLGDAEVRSQRAEMAKGVFNKLGLHDVHVSRGRDYAMNSLQSKEHAKFLLEGHALRAGPGEIHRDSLQDMSRRLARAPHGVGIVVIAGMSDINALITTCPDMVRERVDDITIMGGVEPLKDADGFVQPDARAYNNATDMDAARSLYRKAQELGIPLRIVTKEAAYKTAVSPSFYEGIAGSGHPVGHYLRDVQKSALKGLWEGIQAGLLPGLDDSWFFRTFMPNAQIEAAQLDKNKESSFEDIWPKVTKLNLYDPLTLLASVPGAAKLLFKPKAIHTEGFGVVEQVGPDDVTHPEKAKLLMSALAKSALVQSTVAPD
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 48752.6 | 447 | 6.58 | -0.272 | 46.08 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Phaseolus vulgaris | Disease name: Halo blight of bean |
| Host classification: Eudicots | NCBI Species: 3885 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036452
Pfam:
SMART:
KEGG: psp:PSPPH_A0012
PRINTS: