Effector profile
PlantPEAD ID: PlantPEAD00390 Uniprot ID: B0RMF9 Source: Article
Localization: Cytoplasmic(Exp) Pathogen taxonomy ID: 339 Pathogen type: Bacteria
Species: Xanthomonas campestris Strain: pv. campestris strain 8004 Other name:
Gene name: XopLXcc8004 NCBI Gene ID: AM920689
Entry name: B0RMF9_XANCB Protein name: Type III secretion system effector protein
DOI: 10.1016/j.resmic.2018.12.001
Gene/Protein information
Gene sequence:
ATGCCTCGGATCACAAGCTTTTTCACGCGACAAACGCCAGTGGACAATCCGCAACGTGCCCAATCGCCTGTCGGCGCAGTCAGGAACGAGCGGACACCGCCGGCAGACCAAACGCAGCGCGCGCCTGGCCCGCTCAGCGGCCTGTCTCGACGCCAGCCTAACGCGGGGGCACGAAGCGAGACATCCAGGCCGCGACTCGCTGCGGATGTGCTTGAATTTGATGAGCTTGGTGCAGCGTTGGAGTCGTCCGAAATACCGCAGCTGGATCCCAGCGAACGCAGGCGGTTCAATGTTGATACGACAGCGTCTGCGCAGCTTGTGTCAGCGGGCGGCCGGGTCCTGCAACGCAGTACGCAGCTTCGCTCTTACGAAAGTGTGCTCTTGGAGTGGCGCGACCAATGCGCGGCAAACGCCGACCAATGGCGCGAGGCCTGGATTTCCGCCAACGAAAGCGTGACCGGCGCGGAGTTAAATCTTGAAGTCGCACTGCGAATAAGCGCGGCACATCTAGCGCGTGCAGCGTCGCACAACGTTGCATCGTTGGATCTCTCATACCTTCCACTGCCACGATTCCCGGAGCAGACTTACCGCTTTGGGCATCTTCAAGACATGAGCATCGCCGGCGCGGGCTTGTTGGAACTTCCCGAATCCATCAGTGACCTGGCCAACTTGCGGACCTTGACGTTGAGTCAAAATCCGATCGGCGCGTTGCCTGCGTCCATTTCCAGGCTGGGGGAATTGCAAGAGCTCACCATCTTCAGCTGCCCCAACCTGACCGAACTCCCTGAACATCTTGCAATTCGCAACACTGCTGGCCAGCGCGAAGGATTGGTCAAGCTGCGGACGCTGACACTGTCGCGCACAGGAATCCGCTCGCTCCCGTCATCGCTTGAATACCTGAAAGATCTGACCCACCTAAAAATCAACTCCTCGCCACTTACCGAACTCAACACAAGCATTCATCGCCTCCCCCTGCTGGAAGAGGTTGATCTGCGCGGCTGCACGCGTTTACGCCATTACCCTTCGATTTCGGGACAGCAGTGGTCGCTTAGGAAACTCAGCCTGCAGGACTGCAGCTCTCTGCAAACGCTGCCATCGAATATTGACGCACTGCGGAATCTGCAAGAGCTCGACCTGCGCGGCTGCAACAACCTGCGCGCACTCCCGCCCAGTATTTCCGGGTTACCTGACCATTGCACGATCCGTGCGCCAGCACATTTGCAAGCTTCACTTGACCAGCTCCGACCGCGCAGGCCCCCGCTTGCCCGTCCCTGGGACGTTGCGGGCCCTTCCACTCCCCAGGTTGCCGGCGCCTCGTCCTCCGCGGCCAGGCCCAGTGACGACGATCCGGCAATCACGCAAGCGCGTCAGAAGATCGAAGATACCGTTTACGCTCTGTTCGCAGCGATCGACGAAGACAGGAATCCTTTCGTCCAGAACGCTCCGTATTTCATTCCAGAAAAGCGTGAGGAGGGAACTCCCATCGTCCTTGGCGAAGTGGATGGGATCCAACAAATGCTCAAAGAAAGCAGCCGCGAGGTGTTTAAGAACAAGCTCATCGGTTTAGCAAATAGTCTGCAACAACGTCGCATCCCGCATCCTTGGAAGGCGTCTGACCGGCTTGACACAGCCGAACATAAAGCATTTGTTAATTCGCATCTTGGCACCTTCAACGAGCATTCTCCGATCAACGGAGTCAGTCTCTACAAAGCGGCTCAGATGTGGAAGACCCGCGAACTGCTCGTCCACAACGATCCAACAAACCGCGATTTCCTCCCGCCTATTCCAACGTACTCCCTCCCGGAACAAGCGACTGACGCTTCTGAGAGTTAG
Protein sequence:
MPRITSFFTRQTPVDNPQRAQSPVGAVRNERTPPADQTQRAPGPLSGLSRRQPNAGARSETSRPRLAADVLEFDELGAALESSEIPQLDPSERRRFNVDTTASAQLVSAGGRVLQRSTQLRSYESVLLEWRDQCAANADQWREAWISANESVTGAELNLEVALRISAAHLARAASHNVASLDLSYLPLPRFPEQTYRFGHLQDMSIAGAGLLELPESISDLANLRTLTLSQNPIGALPASISRLGELQELTIFSCPNLTELPEHLAIRNTAGQREGLVKLRTLTLSRTGIRSLPSSLEYLKDLTHLKINSSPLTELNTSIHRLPLLEEVDLRGCTRLRHYPSISGQQWSLRKLSLQDCSSLQTLPSNIDALRNLQELDLRGCNNLRALPPSISGLPDHCTIRAPAHLQASLDQLRPRRPPLARPWDVAGPSTPQVAGASSSAARPSDDDPAITQARQKIEDTVYALFAAIDEDRNPFVQNAPYFIPEKREEGTPIVLGEVDGIQQMLKESSREVFKNKLIGLANSLQQRRIPHPWKASDRLDTAEHKAFVNSHLGTFNEHSPINGVSLYKAAQMWKTRELLVHNDPTNRDFLPPIPTYSLPEQATDASES
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
67442 610 6.43 -0.465 56.45
Plant infestation information
Experimental plant: Arabidopsis thaliana (related: thale cress)
Susceptible plant: Brassica napus, Arabidopsis thaliana Disease name: Black rot
Host classification: Eudicots NCBI Species: 3708, 3702
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
No Record found.