Effector profile
| PlantPEAD ID: PlantPEAD00395 | Uniprot ID: F6G5M5 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 305 | Pathogen type: Bacteria |
| Species: Ralstonia solanacearum | Strain: strain RS1002 | Other name: Ralstonia nicotianae, Pseudomonas solanacearum |
| Gene name: RipB | NCBI Gene ID: CP002819 | |
| Entry name: F6G5M5_RALS8 | Protein name: Type III effector ripb protein | |
| DOI: 10.1111/mpp.12824 | ||
Gene/Protein information
Gene sequence:
ATGAAGGCTCTCACCCGATCACCCGCCTATCCGTCCGGCCTGCGCGACCTTGTGGCCACTGCCGAGACGGATGCCACAACGCACCCGCTGCGATCACTCACCGGCATGCCGCCGGGCACAACCGGCACGCAGAAGCCTCCCGGCAAGTCGGTCACCGGCGGCCCCCTGGCAGGACTGAGCAAGACCGGCCTCAGCATCGCGCTTCCGGAGCGTGCGATCCCGATCCACCGGCCGGCCGCGGAAGACCTGAGCGCCTCGGCCGGTCTCCTGCCCCACCCCTACCCGAGCGCGACCTCGCCCGACGCCATCGAACGGGCGCTGCAGGCCGCGTTCTGGAAAATCCACGGCACGCCGAGCTATGCCGAGCGGCTGCTCCTGAACCAGTTGAAGTCGCATCGGCCTGCGGTGCCGCAGCCGTGCATTCTGTTCACCGACCCCAACAAGGACCCGGACGATGTCGTAGCCTTCACGCTCGGCAAGCCGCTGCAGGTGTACGGCCTGGTGAACATGACCCATGCGGTGGCGACCCTGGGCGAGCGCGAAGTGCGGGCCCGGCGCGCCGACGTGGCCAGGGGCGTGTTCGACCGGCTCGGCCTGCCCGACGTGCGGGTCTCCGTGGGGCGCGACTACGACATCGATCCGCTGCGCGCGGAGGACCACGCCAAGTTCCTTGAGGCAGGCGAGGCGCTGTACCCCAAACCGAAGACCTCCACCAGAAACGGCGCCGATGTGCCGGAGGCCCCCACCGAAGACAGCGTCGATGCGCTGCGCAACAGCCTCACGCAGGCGACGGAAAAAGTCACGCTGGTCGTGATCGCCGGCATGACCGACCCGGGCGCGCTGGTCACGGCCGAGCCCGACCTGGTCAAACAGAAGGTCGGGCGCGTGGTCATCATGGGAGGCGTGCTGCCGGAGAAGGACCAGGACGGCTATGTCCAACCCGACGCGCGCGCCTACAACAACCTGACCGACCGCGCCGCGGCGAGCCTCTTCTACCGCCGCGTGCAGGAGCTGGGCATCCCCCTGCGCGTCGTGACCCGGGAAGCCGCATACCGGGCGGCAGTGCCGCGCACCTTCTATGAGAACGCGGCGCAGTCCGGCCATCCGGTGGGGGAGTACCTGCAAACCATCCAGAAGCACGCGCTCGGCGAGCTGTGGGACAGCATCGACCGGGGCCTGATCCCGAAGCTCGACAAGGTCTGGTTCTTCAATACCTTCATCGCCCCGGCAAACGGGCACGGCAACGCGGCGGCGTGGGCGGCCCGCAACCCGACGTTCGACCAGATCTGGGAGCAGGTCACCCGGCTCAACCTGTACGACCCGATGACGCTGCTCGCCGCGGCGGAAGGGTCCGCGCGGATGCTGTTCAGTCCGAAAGCCGTGCAGGCCGAAGACCGCAGCCGCGTGGAGGTGATCGGCGCGGACGAGGTGCTCTGCGCGGAAAACGCCCGGCAGTTGATGTCCGCGCTGACCAAGGTGGCTCTGGCGGACGCGCCGGACGCGCCAGGCACGCGCTGA
Protein sequence:
MKALTRSPAYPSGLRDLVATAETDATTHPLRSLTGMPPGTTGTQKPPGKSVTGGPLAGLSKTGLSIALPERAIPIHRPAAEDLSASAGLLPHPYPSATSPDAIERALQAAFWKIHGTPSYAERLLLNQLKSHRPAVPQPCILFTDPNKDPDDVVAFTLGKPLQVYGLVNMTHAVATLGEREVRARRADVARGVFDRLGLPDVRVSVGRDYDIDPLRAEDHAKFLEAGEALYPKPKTSTRNGADVPEAPTEDSVDALRNSLTQATEKVTLVVIAGMTDPGALVTAEPDLVKQKVGRVVIMGGVLPEKDQDGYVQPDARAYNNLTDRAAASLFYRRVQELGIPLRVVTREAAYRAAVPRTFYENAAQSGHPVGEYLQTIQKHALGELWDSIDRGLIPKLDKVWFFNTFIAPANGHGNAAAWAARNPTFDQIWEQVTRLNLYDPMTLLAAAEGSARMLFSPKAVQAEDRSRVEVIGADEVLCAENARQLMSALTKVALADAPDAPGTR
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 54450.9 | 505 | 6.4 | -0.256 | 35.58 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Solanum melongena, Solanum lycopersicum, Solanum tuberosum | Disease name: Bacterial wilt |
| Host classification: Eudicots | NCBI Species: 4111, 4081, 4113 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR001910,IPR036452
Pfam: PF01156
SMART:
KEGG: rsn:RSPO_c03161
PRINTS: