Effector profile
| PlantPEAD ID: PlantPEAD00417 | Uniprot ID: C5AA67 | Source: Article |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 337 | Pathogen type: Bacteria |
| Species: Burkholderia glumae | Strain: strain BGR1 | Other name: Pseudomonas glumae |
| Gene name: TssD1 (bglu_1g03910) | NCBI Gene ID: CP001503 | |
| Entry name: C5AA67_BURGB | Protein name: Putative type VI secretion system protein TssD | |
| DOI: 10.1111/mpp.12966 | ||
Gene/Protein information
Gene sequence:
ATGTTAGATATCTATCTCAATTTCGGTAACCCGGCCATCAAGGGCGAGTCGCAGGACAAGGACCACTCGGGCTGGATTGAACTCAAGTCATGGGACTGGTCGGTCACGCAGCCGCGCTCGGCCACCTCGTCCACCTCGGGCGGCCACACCGCCGAGCGCTGCGAACACAGCGACATGGTGTTCACGAAAGAGCTCGACATGGCGAGCCCGCTGCTGTACCAGCACGCATCGGGCGGCACGACCTTCGACGAAGTGTCGATCGACTTCATGCGTTCGGACGGCGACGGCAAGCGCGTCAAGTACCTCGAGATCAAGCTCAAGTACGTGATCATCTCGAGCGTCACGCCGAGCGTGCAGAAGGAAGGCCTGCCGGTCGAGCAGTTCTCGCTGAAGTACGCTGCGGTGCAGTGGAAGCAGACCAAGCAGAACATCGGCGGCAACCAGGGCGGCAACACCCAGGGCGCCTGGAGCCTCACGAAGAACGACAAGACCTACGCGGTCTGA
Protein sequence:
MLDIYLNFGNPAIKGESQDKDHSGWIELKSWDWSVTQPRSATSSTSGGHTAERCEHSDMVFTKELDMASPLLYQHASGGTTFDEVSIDFMRSDGDGKRVKYLEIKLKYVIISSVTPSVQKEGLPVEQFSLKYAAVQWKQTKQNIGGNQGGNTQGAWSLTKNDKTYAV
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 18556.7 | 167 | 6.07 | -0.601 | 35.56 |
Plant infestation information
| Experimental plant: Oryza sativa (related: rice) | |
| Susceptible plant: Oryza sativa | Disease name: Bacterial panicle blight |
| Host classification: Monocots | NCBI Species: 4530 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036624,IPR008514
Pfam: PF05638
SMART:
KEGG: bgl:bglu_1g03910
PRINTS: