Effector profile
PlantPEAD ID: PlantPEAD00441 | Uniprot ID: Q8XZC6 | Source: Database |
Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 305 | Pathogen type: Bacteria |
Species: Ralstonia solanacearum | Strain: GMI1000 | Other name: Ralstonia nicotianae, Pseudomonas solanacearum |
Gene name: RSc1475 | NCBI Gene ID: AL646052 | |
Entry name: Q8XZC6_RALN1 | Protein name: Type III effector protein | |
DOI: 10.1093/nar/gkab1037 |
Gene/Protein information
Gene sequence:
ATGAAAATAGGTGGAACCCAATCCGGTCCGGTCGTTCCCAGCTCAGACTCCACGGTCGAGGGCAGTCCCGCGCCGCTCACGCACGGTCCGACCTCGACCGCCCCGACCACCCCCGAGCCGCGGCAAGTCTCGGGCGAGCACGGCGGGCATCTGCGCAGGCGGGTTGGCGCGGGCGCTGCCATGGTGTCGTCGATGACGCGGCGTGCGAAGCTGCCCGAGGCGGTGGACACGGTGCGCAACGCCAGCCTGACGCGGGCGCTGCAGACCACGGTCAAGGGCGTGGTTGCGCCGGCGGTCACCTTGACAGGCAGTGTGCTGTCCACCGTCGGCAAGGCGGTGCGGCAGGCGTCGCAAGCGCCGGCCTCCAGCCTGCCGTTGCAGCGGGCCCTCGGGGGCGATCTGACCCAACCCGATCGGCAGATGGAGGCACACCGTAAGGCGGTGAATTACGGCAAACATTCCGCGCAGCATCTCGATCGCATCGTGGCATTCCTGCACGGCGTGCTGCGCCTGAGCGCCGGTACGTCAACGGCGTTCGGCGTGGGCCGCAATGCGGGCCTGGCCGCCGGCGACGCGCTGGGCCGCGCCGAACGCGGCGTGCCGCAGGCCAGCGGGGTCATCACCGGCAGCGAGGCACCGGCGCGGACGATGTCTTCGCAATCCGCGTTCCTGCTGGCCGCGGCGGGTGTGCAGCAGTGGGCGCTGGGGGCGGTGACCGGTGCGGCGGGCAACCTGGCCGGGCAGGTTGTCGCCGGGCCGATCATCAACATGCTGCCGCGCCAGTTTCAGGCCATCGACGCCCGCGCCGTGGTGCCCCAGGAGATCGTGGCGCTCATGAACGCGCTGAAGCCGGGGGCCGGCAACGAACTGCGCGACAAGGCCAAGGCGATGCAGGCGGATATCGCCAACATCGCCAGCGACAGCAGCGTGTGGCTCGGCCAGATCGCGTTCGACTCGATCACCGCCGCGCGCATGGCCGCCCAGGGCGGCACGCCGCTGGGCGTTGCCGGTCAGATCAGCCTGGGCCTGGCGGTGTCGGGCACGGCTGGCGCCGTGATCGGTGCGGTGATTGCGGTGCGGCAGTCGACCGCCACGATCGACGTGCCGAAAGCCGATGCGTTGCGCGCGGCCCTCGAATTGGCGCCCGCCGACCGGCCCGCCGTGCTGGAGACGCATGCCGTGCCGCTGTTCTTCGCCAAGCATGCCACGATGCCGGCCACGGCGGCGGCAGGCGATATCGAGACCGGCCATATCGCGACCGCCGCGCAACCGCACCAGCAGGAGCAGATGTCGCGTATGCATGCCGCAGTCCAGCAGGTCAAGCAGATGGTGGGCGGGCTCGGCGGCCTGGTGACGGCGCCGGCCGGTGCCATCGCCAAGGCATTCACGGCGGGCCCGCTGCTCGAGCCGCAGCCCACGGTCGAGGGGGCGGCGCCGTCCGGCCAGGTGAGCCGTGCCACGGCCACGGTCTCCAACGTGCTTGCCAGCGGCGTCCGGCGCACGAAGCTGATGGCCGAGTCGACCGCCGTGACCAGCCTGATGTCCACCGGCAGCGCCATGCTGGCCAGCGCGACCGAAGGCCCGGCACGGCGCGCTGTGCTGGCGCTGGGCAACGCCATCGGCATCCACGCAGCCATCCGGCCCTGGTTCAACGCCCTGGCGAACGATATCCCGGCGGGCGACAACGCCATGCGCGCCGAGCGCCAGCAGCATGTCAACGCCCAGGTGCCGCGGCCCGAGCAGCCGGAAGTCTGA
Protein sequence:
MKIGGTQSGPVVPSSDSTVEGSPAPLTHGPTSTAPTTPEPRQVSGEHGGHLRRRVGAGAAMVSSMTRRAKLPEAVDTVRNASLTRALQTTVKGVVAPAVTLTGSVLSTVGKAVRQASQAPASSLPLQRALGGDLTQPDRQMEAHRKAVNYGKHSAQHLDRIVAFLHGVLRLSAGTSTAFGVGRNAGLAAGDALGRAERGVPQASGVITGSEAPARTMSSQSAFLLAAAGVQQWALGAVTGAAGNLAGQVVAGPIINMLPRQFQAIDARAVVPQEIVALMNALKPGAGNELRDKAKAMQADIANIASDSSVWLGQIAFDSITAARMAAQGGTPLGVAGQISLGLAVSGTAGAVIGAVIAVRQSTATIDVPKADALRAALELAPADRPAVLETHAVPLFFAKHATMPATAAAGDIETGHIATAAQPHQQEQMSRMHAAVQQVKQMVGGLGGLVTAPAGAIAKAFTAGPLLEPQPTVEGAAPSGQVSRATATVSNVLASGVRRTKLMAESTAVTSLMSTGSAMLASATEGPARRAVLALGNAIGIHAAIRPWFNALANDIPAGDNAMRAERQQHVNAQVPRPEQPEV
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Main properties of effector
Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
---|---|---|---|---|
59140.4 | 584 | 10.34 | 0.059 | 43.85 |
Plant infestation information
Experimental plant: | |
Susceptible plant: Solanum melongena, Solanum lycopersicum, Solanum tuberosum | Disease name: Bacterial wilt |
Host classification: Eudicots | NCBI Species: 4111, 4081, 4113 |
Pathogen-plant protein interaction
Uniprot ID | Protein name | Gene name | Species | Protein sequence |
---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG: rso:RSc1475
PRINTS: