Effector profile
| PlantPEAD ID: PlantPEAD00443 | Uniprot ID: S6TYC4 | Source: Article |
| Localization: Apoplastic(Exp) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. actinidiae biovar 3 strain ICMP 18884 | Other name: |
| Gene name: HopR1 | NCBI Gene ID: AOKG01001539 | |
| Entry name: S6TYC4_PSESF | Protein name: Type III effector HopR1 | |
| DOI: 10.1111/mpp.12989 | ||
Gene/Protein information
Gene sequence:
ATGCGAAATCGGCCGCATGCCAGTTTGAACAGTCAGGTGCTCGGACTGCAAGCGGTGCCGTCGCAACGTGGAAAGCATGTTCGTGTCAGAAGTCATGCCGATGGCGAGAGTGTCATTAACGCCTGGCTGGCAAAGCGACCCTCGGTTCAAAGCGAAACCAGCCTTGGTAGCGACGGCAAGCTGGTGCGTTATAACGCTGTGAGTCATGAACCGCTGGCGCCGCGCAATGAGGCGTTTTTCACCTCTGTGCCGGGGATGTTGATGGCCGTTTTGACGGTCCATCCCGAGATGGAGCATGGCATCAGCGGGGACATAACTGCCGATGCTGTGGCTGCCCGGCTTGCTGAACCGCCAATAGGGTTATTGACCGGGGTCTGGCAGTCTTCCCATGATCGAGCCTATCTGGAGCGTGGCGGTGTGGTGCACACCGCAAATATGGAAGAGCGCTGGGCGCCGTTGACGCTGCCAGGCATGGATCCCCGAGAGCCCCTGCGAATGACTGGTTTGCAGGCCGATGGTGGTGTCTATCTACATAACGGCAGCCAACTGTGGCGCTTGACCGACACTGCCGCCGAGTCCGTGACAACCGAAAACCTTCCTGAAGGTGCGGCGGTACGCATTGGCGCCGGTGGCGAGGTGCACGGGCTGCATGAGGGCGCGGTGCATTCGAATGGCATTTCCCGTCCAATCGAGCTTTGGCGGCCAAAAGCTGGCGCGCCGGGGAGCGAACAGAGTCCGGCGCGCCCCGTGGATTTGCTGCCGTTGCCGGGTGGCACCGCTGCGCTGATCCTCGATGACAAGGGGCGTATTTATCACGCTGATCTGAAAGGCACAGGCGCTGTTGAAGCCCACCGGCTGAAATTACCTGCTGACTTTGCGCAGGGTAAAGGTTGGGCCGTGACCGCCATGGGATTGTCCCGAGACGAAACTGTTCACCTGATGCTGCAGGACCAAAACGGGCGGCGCATGAGTTTGCAGCGAGCGCCAGGCGAGGCGTTGTTTCGTCCTGCGTACCTGCTGGATCGCCCGTTGCTGCTGCTCTATACCGAAGGGCTGCATGTTCCGTCGGAGGCCGCAGTGCAGTCGCACGTTCAGCTTGATGGTCATGCTCAGCTGGGGCATATCGACGGTGTGCTGCATTATAAAGCGGCTCCCGATCAGTCGTGGGAACGGCTAAAGCAGTCGGGCGGCGAACCGCTGACGGGTGTGGACGCTCTGTATTCCAGCCCGTTGGGGTTTATCGACAGAAAACCGGTTTTCGCTTTGCTGGGCGATGCCCGGCAGGTGGTCGAGCTGAAACTGGAGGGGCGTACATCCTGGTTGCCGAGCGATGCCGAACTGCCGCGTCACCCTGCGGGCGGGCCTTTGGCGGTCATACCGGATACGGTAGCGTTACGCACCAGCCTTCTCGCGCAGTTTGACGAGCCTTTACAGGCGCTGGCGGTTCACGGTAACCGCCGGGTCGTCGCGCTGACGGATTCTGGCCGATTAATGGCTGCCGATGCGGACAGCCCAGCCCGCCGACTTCCCACGTTGCAGCGCCCCGTCGCCATCGCCGTAGGGCTTAACGATCAGTTGCTCGTGCTGCACCACCCCCATAGCCAGCGCCCTCAGTTGAAACGGTTGAGTGCGAACGATGACTGGGAGCCGGTGCCGATAGTTCTGCCGGGCATTGTTCACCCTTCAAGTCTTCGCGCTACTCGCACGGGGCAAATACAACTACAGCTGGGAGAAAACTGGCATACGTTGCTGCCATCAATGACCTCGCACGACAATCAATCCCTGCCGGCACGCGTTAAGCCTGAGCCAGAGAGGGATGAAGCGCCGTCGGAGAACTTCCTTGCGGGTAGCAACGCCCTCGCCAATCAGCAGCAAGCCAGTCGTATCAGCACACCGCATCATGACGCATCGGTGGTTACGTCGCTGCTGGGGACAACGGCCAACAACCCGTTGACGGCGGCGTCGAGCCTACAGGCAGTGGTTGATACGACCCGCGCTCAGGTAGGCGCGTTGGCGAGAGATGTAGTGGGCGCAGCGGCGAACAGCGCGATACGGTCAATGGCGCATACGCTGGGTGTCGTACTGCCGCCAACGCCTCAGGAGAAGCGCCTGGCCAGTTTCCATCATGAGGCGAAACAGGCTTACACATCAGGAAAAATACTGTTTGAACATCTGCCGACACTCGCGCAAGTGCGCGTCGCTTCGGCCGTAGGGCCGTCGGACGGAGAAAGATTCGGACTGTCACATCAGCAAACGCAACGCTTGTTGAATCTGCGAGAAGGGAAACTGGAGGCGCTGTTACGCGACTTGCGCAAGATCGGCTTTCATGAAGGCGTGATCATGGGCGATATGGGCGACAGCGACAGTGCGGACGATAGGGTTTCTACCACCTCTACGCCAACGTTCCGGCTGGCCGAGCTATGGCGACGACAGCATTCGCGAGTGGATGAGGCGCTGTCTTCCGCCGGATTATCCAAATCAGAAGACATGTTGCCGAACCTCAACCGGAGTATCAAAGCGTTGGCTGGCGGCGCGGCCCTGCATGCGGATCGTATGAGCGAACGTGAGGCTGAGTTGTTGAGCGTTTTGTGCGAGGTCAGCGAAAAAATGATGCGCGCTGGCGTACGCTTGCCGGCAGATGATGGAAGCGTTGACAGCGCCCACAGCCAGGCGCCACACGGCTTGCGAACAGCAGGATTGATTGCAGGTCTGGTGGACTACGATGCGCTGTTGAGCAGCACGGACGCGCAGGCGCTGGAAATGACGGAGCGACTTCAGCAAGATGCCAGGCTTGCGGCGTTGTGCAAACTCGGTCTGTCTTCGTGGGGTCAGTTAGCGGCTTTCGATGATGTGGCGACGACGTTTCGCGAACAGATAGCGTTACCGGGCTCGGCACGCCGCACCCAGTTGCTCAAAAATCTTGGCTTGCCACCCGATGCCGCGCCGGACGAAATGGCGGCGCGCATGTCCGACTTACTCCTGGATCTGTTTAACCGGAGCACCTTCTTTTCGACTCAGTCGCGTGGTCTGGAACTGCGCGGTTCGTTGGGATCGGCTGACTGGAAACATCTCAATGCGTTCAGCGTCGGCGTGACTGGCGAGGCGCTTCAAGTGCTCGGCGTAGAGCGCATCGGCGATGGCAAGGATGGCGACGCCGGCCTGGTCGCGTTTTTTGTGCGCCACGCCAAGGCCTCTGTATCCGCGACGTCAGGGATCGGAATCGACTTCAAGCCAGGCCCCGGCACTGGCGGCCGTGTTATTGATTCGCGACCGGGCCGCTCGATGAACTCGACGTGGGGAGGCTCTGCCAACCTGGGTATTTCCGGCGCGTACCAGCATGGTCAGGGCGCCGCCGTGATCATCGCACCTTCGACGATCTCTGATTTCGCGCGGCTGTTATTTGATGTCAACCATCCCGATACCACCCACATCCTGCGCACCGGTGTGAACGGTGGTTCGATTGGTCTTGATCTGTTTGAAACCAATGTGAATGCCTCTGTGGGCGCGAACGTCAGCGTATCGCCATTCAGCCTGAGCCAGAAATATGGGCCACAGAAGCCGACGGCAGATGCGGCCGTCTCTGGCGCAAACAATCGGCGCAGCACTGCGTCGGGGGCGTTGTCGGTAGGCGGGACGGCTCAGGCTGGCGCGCACTGGGGGCAAATGGAGTTACACCTGGATCACGCCTGGGCCGATATTATCGGTCTGGAATTTCAGGGCCGTACGGATTTCAATCTTGAATTCAATAGCAGCCTGAATCTGGGAGGCGCGCTGTCTTCCGCGCTGGGCGATAACCCCCAGAAGTTGATAAATGCCTCCACTGGAAACGGTAATCTGCAGCTCGCCGGCATCCGCGTCGCGTCAAGCGACGTGCAGTTGCCGACCGATGCGGTGGTTGATGACAAGCGCCGCGGCCCCTTCCTGTCAACGGCCAGCTATAAACGCACCTTTGATACCGAAGTTGCCAAGTCTGTTACGGCTGGGGAGTGGGGCCAGATGCGCCAGCGCCTTGCCAAAGCCTTTCCTGACAATATCGCAGAGTTGGGCGCGCTCGATTACCCGACCAGGCCTGGCGAGCGTATCGCGACCATCAAACAGGTGATTGACCGCATACAAGGTGCGAAGGCGCGCAGCGTGGAAGCCGTCGGTGCCATGGACGGAAAGGCATTGCGCCGTCAGCGTCTCGATGCCTCGAGAGAAATGTCGAACGCCGGCAACAGTGTATGGCGGGCGAGCTCCGAAATTGAGCGCGCCTCGATCGTGGAGATGCTGCATCACTTGCGTCAGCAGGAGCAAAGCGCCGTGCAGAATCACGCCCGAGCCATTCCCGGTGCGCGCGTGGAATTCAACCTGTTCGGTCGTGAATCGCTGGAAACAGTGGTCTTTCACGCCATCGGTCATCTGGGGCTTGGCAGCAAGCTGAACGATCTGGCGGAGCTGCGTCGCAAGGTGCCGGGTCTCGATCAGGTCATGCTGAGTTTCCAGTCTTTGCCCAAGGTCAATCAGGTGCGCTACGTTTTTGAGATGCGCCCTCAGGCGAGGTTCGCCATCAATGACGCGCTACTGGCGCGCGAGCAGCAGGCATCGGCACGTGCGCTCGGTTTGCCGGGACCCTCGGGAAGTGAATTGAATTGGCGCGGCGTCCTGGACAAGATCAAAACCACGCCTGACCTTTATCGGCTGGCGGCGATCGCCGTACATAACACAGATGAAAACCCCGTGACCTCAAGAATAGGGCTGCCGCTGCTGAACGTGTCGGCCACAGGCGCGACATCGCATCAGTTGTTCGAAGCGGAAATCCAGTTCCGATACGGTCTGTATGACGGTCTGCAAGGGGTTGAGTTGCTGGAGGCAGGAAACAGGGCATTGCAGTCGCCGTTACGGGCATTACAGCAATCCGGTATTCAGGCCTTGGGGCAGAGAACCCAGGCCGGGGAGGTTGCGTATGGGCCGCCTTCGCCGCGTAAAGAGTCGCCGTTGCGCAGCGCAGTGGATGCTGCTGCGCTGACAACCAATGACATGGCGCGACAACTTGAGGTTAAAGTCCAGCGTATGAATACCGCGCATGAGCGTGAGGCGAATGCTATCAGTTCGTTCCAGCAGGCTTACGGGATCGCGTCCGCGCATCTAGACAGGCTGCTGTTGCGCATTCCTGAATTGCCATTGCCTGAAATTGACGACCGCGACGCCGATGGAGGACGTGTGCGAGGTACATTTGCGTCGCTCCAGCGACATCATCAGGCGCTGGATGACGCTATAAGTGCCATGCATCAGGCCAGCGAAAAGGTGTACACGATACCTGGCAAGCGGACCCCTCAAGAGCAAGACCCGGCGTTGGCTCAACTGCTCTCTGTTGAAAAGCGTCGGCGTTCGCTCGGGCATGCCCTGGAAACACTGGCTGGCAGAGGGGTGGAAGCGGGCACGGCCACAGGGCTTGAACTTAACAGGGTCTCATCGCAAGTGAATGATCTGGTCGCTCGCCGGGACGCATTGCTGAAGCAACGTGAAAGCGGTATTCAGGAGGGCGTTCAGGATCGCGAAGAGCTGGAAATGGAACTTCAATTGACCATCTCAGTGTTGCAGCGGCTGCGCGCCGATTTGCTCGACGAGCAGCAGGCGATGGAGGCTACCGCCAAGCGCCTGGATCAGGCGAGCCGCGCTGCCCTTGAGGGTGAGCGCAGCTTCAGCGATGCCGTGCGTGACAGTGCGTGGGGTGAACTCGATAACCTGTAG
Protein sequence:
MRNRPHASLNSQVLGLQAVPSQRGKHVRVRSHADGESVINAWLAKRPSVQSETSLGSDGKLVRYNAVSHEPLAPRNEAFFTSVPGMLMAVLTVHPEMEHGISGDITADAVAARLAEPPIGLLTGVWQSSHDRAYLERGGVVHTANMEERWAPLTLPGMDPREPLRMTGLQADGGVYLHNGSQLWRLTDTAAESVTTENLPEGAAVRIGAGGEVHGLHEGAVHSNGISRPIELWRPKAGAPGSEQSPARPVDLLPLPGGTAALILDDKGRIYHADLKGTGAVEAHRLKLPADFAQGKGWAVTAMGLSRDETVHLMLQDQNGRRMSLQRAPGEALFRPAYLLDRPLLLLYTEGLHVPSEAAVQSHVQLDGHAQLGHIDGVLHYKAAPDQSWERLKQSGGEPLTGVDALYSSPLGFIDRKPVFALLGDARQVVELKLEGRTSWLPSDAELPRHPAGGPLAVIPDTVALRTSLLAQFDEPLQALAVHGNRRVVALTDSGRLMAADADSPARRLPTLQRPVAIAVGLNDQLLVLHHPHSQRPQLKRLSANDDWEPVPIVLPGIVHPSSLRATRTGQIQLQLGENWHTLLPSMTSHDNQSLPARVKPEPERDEAPSENFLAGSNALANQQQASRISTPHHDASVVTSLLGTTANNPLTAASSLQAVVDTTRAQVGALARDVVGAAANSAIRSMAHTLGVVLPPTPQEKRLASFHHEAKQAYTSGKILFEHLPTLAQVRVASAVGPSDGERFGLSHQQTQRLLNLREGKLEALLRDLRKIGFHEGVIMGDMGDSDSADDRVSTTSTPTFRLAELWRRQHSRVDEALSSAGLSKSEDMLPNLNRSIKALAGGAALHADRMSEREAELLSVLCEVSEKMMRAGVRLPADDGSVDSAHSQAPHGLRTAGLIAGLVDYDALLSSTDAQALEMTERLQQDARLAALCKLGLSSWGQLAAFDDVATTFREQIALPGSARRTQLLKNLGLPPDAAPDEMAARMSDLLLDLFNRSTFFSTQSRGLELRGSLGSADWKHLNAFSVGVTGEALQVLGVERIGDGKDGDAGLVAFFVRHAKASVSATSGIGIDFKPGPGTGGRVIDSRPGRSMNSTWGGSANLGISGAYQHGQGAAVIIAPSTISDFARLLFDVNHPDTTHILRTGVNGGSIGLDLFETNVNASVGANVSVSPFSLSQKYGPQKPTADAAVSGANNRRSTASGALSVGGTAQAGAHWGQMELHLDHAWADIIGLEFQGRTDFNLEFNSSLNLGGALSSALGDNPQKLINASTGNGNLQLAGIRVASSDVQLPTDAVVDDKRRGPFLSTASYKRTFDTEVAKSVTAGEWGQMRQRLAKAFPDNIAELGALDYPTRPGERIATIKQVIDRIQGAKARSVEAVGAMDGKALRRQRLDASREMSNAGNSVWRASSEIERASIVEMLHHLRQQEQSAVQNHARAIPGARVEFNLFGRESLETVVFHAIGHLGLGSKLNDLAELRRKVPGLDQVMLSFQSLPKVNQVRYVFEMRPQARFAINDALLAREQQASARALGLPGPSGSELNWRGVLDKIKTTPDLYRLAAIAVHNTDENPVTSRIGLPLLNVSATGATSHQLFEAEIQFRYGLYDGLQGVELLEAGNRALQSPLRALQQSGIQALGQRTQAGEVAYGPPSPRKESPLRSAVDAAALTTNDMARQLEVKVQRMNTAHEREANAISSFQQAYGIASAHLDRLLLRIPELPLPEIDDRDADGGRVRGTFASLQRHHQALDDAISAMHQASEKVYTIPGKRTPQEQDPALAQLLSVEKRRRSLGHALETLAGRGVEAGTATGLELNRVSSQVNDLVARRDALLKQRESGIQEGVQDREELEMELQLTISVLQRLRADLLDEQQAMEATAKRLDQASRAALEGERSFSDAVRDSAWGELDNL
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 205485 | 1910 | 6.35 | -0.302 | 40.16 |
Plant infestation information
| Experimental plant: Actinidia (related: kiwifruit) | |
| Susceptible plant: Actinidia chinensis | Disease name: Kiwifruit bacterial canker |
| Host classification: Eudicots | NCBI Species: 3625 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: