Effector profile
| PlantPEAD ID: PlantPEAD00456 | Uniprot ID: G2XDH0 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 27337 | Pathogen type: Fungi |
| Species: Verticillium dahliae | Strain: strain VdLs.17 / ATCC MYA-4575 / FGSC 10137 | Other name: Verticillium wilt |
| Gene name: VdSCP41 | NCBI Gene ID: DS572713 | |
| Entry name: SCP41_VERDV | Protein name: Effector SCP41 | |
| DOI: 10.7554/eLife.34902 | ||
Gene/Protein information
Gene sequence:
ATGAGGACCGAGACAGCCTCTCTCCTGCTCCTCGCCGCCCTCAGCGTGGCCGAGGAGCTGACGCCAAATGATGTTCCACTCGCCTGTGCCAATATGTGCGGCCCTATCGTCGAGCTGAGCTACAAGTGCGATGTCGACGGCACCGATGAGCTGCGCAAGTTGAAGAGGCGGAAACTATTCAGCCCACAACAGCAGCAGCAGCAACAACAACAACAGCAGCAATCAGCACCAAAGGCCAAGCGTCAGGCCGATCCAGAACCGCAAGCACCAGCACCGGTTCCCAGCTCAACAAACAATCAACAAGCGGCCGATGTCATCTTCATCCCCGGTTCCATCGGCAAGTTCAAGACAATACCGACGCCGTTGCCACCAGCCGACACGGGCGTGCCCTCGATGGCCGTCACGCCCGCCGCTCCGGCACCAACGCTACCAGTCCTCGATCTGCGACCAACAACGACGCCGACGAACCTCAATCCCAACCTCCCCATCCTTGCGACGCCAATCCTTCCCTCGGTGCCAGCGTCGACGCCCCTCGCAACGGCTTCGTCGACGCAAGTGCCGCTGCCCGTGGGCAATGAGGCAGATGCCGGCGACGGCGTAGACGCCGGCCCCGCCCCCAGCAACAGCCTCAACGGCAACGTCGGCGACATGGTCGACGACGCGGGCAACCTCTGGCCCGGGCAGAAGGGCCGCCAAGCGGCAAGCGACCTCGAGACGGCGTGCATCTGCAGCAACACGAGCTTCAACGTGCGGCGCGTGGCCGGCTTGTGCGGCGACTGTCTGGAACAGGTCTCTGGCGATCAGGGGCCGATGAGGGCGATTCTTGCGTCGTGCAATTTTACGACGGAGCGGTATGAGCCGGAGAAGGAATCGCTCGTCGCCAACGTCAGGGTCGAGGCGACGAAACCGAGCTTCACGCAGACGGCGGCGGCATCCTACTCGTGGCGCGTCTCGGGTCCGACGTGGGCCGTTGTCGTCGGGGCGGGCATGCTGCTCGGGATGGGTTGGTGA
Protein sequence:
MRTETASLLLLAALSVAEELTPNDVPLACANMCGPIVELSYKCDVDGTDELRKLKRRKLFSPQQQQQQQQQQQQSAPKAKRQADPEPQAPAPVPSSTNNQQAADVIFIPGSIGKFKTIPTPLPPADTGVPSMAVTPAAPAPTLPVLDLRPTTTPTNLNPNLPILATPILPSVPASTPLATASSTQVPLPVGNEADAGDGVDAGPAPSNSLNGNVGDMVDDAGNLWPGQKGRQAASDLETACICSNTSFNVRRVAGLCGDCLEQVSGDQGPMRAILASCNFTTERYEPEKESLVANVRVEATKPSFTQTAAASYSWRVSGPTWAVVVGAGMLLGMGW
Loading ...
Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 35173.8 | 336 | 4.79 | -0.224 | 48.13 |
Plant infestation information
| Experimental plant: Solanum lycopersicum (related: tomato) | |
| Susceptible plant: Gossypium hirsutum, Lactuca sativa, Solanum lycopersicum | Disease name: Vascular wilt |
| Host classification: Eudicots | NCBI Species: 3635, 4236, 4081 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
F4K2R6
|
Calmodulin-binding protein 60 G
|
CBP60G
|
Arabidopsis thaliana (related: thale cress)
|
MKIRNSPSFHGGSGYSVFRARNLTFKKVVKKVMRDQSNNQFMIQMENMIRRIVREEIQRSLQPFLSSSCVSMERSRSETPSSRSRLKLCFINSPPSSIFTGSKIEAEDGSPLVIELVDATTNTLVSTGPFSSSRVELVPLNADFTEESWTVEGFNRNILTQREGKRPLLTGDLTVMLKNGVGVITGDIAFSDNSSWTRSRKFRLGAKLTGDGAVEARSEAFGCRDQRGESYKKHHPPCPSDEVWRLEKIAKDGVSATRLAERKILTVKDFRRLYTVNRNELHNIIGAGVSKKTWNTIVSHAMDCVLDETECYIYNANTPGVTLLFNSVYELIRVSFNGNDIQNLDQPILDQLKAEAYQNLNRITAVNDRTFVGHPQRSLQCPQDPGFVVTCSGSQHIDFQGSLDPSSSSMALCHKASSSTVHPDVLMSFDNSSTARFHIDKKFLPTFGNSFKVSELDQVHGKSQTVVTKGCIENNEEDENAFSYHHHDDMTSSWSPGTHQAVETMFLTVSETEEAGMFDVHFANVNLGSPRARWCKVKAAFKVRAAFKEVRRHTTARNPREGL
|
|
A0A1U8IPT1
|
Calmodulin-binding protein 60 B
|
CBP60B
|
Gossypium hirsutum (related: cotton)
|
MMLPTKRPAPDHGDDERNEVMVPEPKRRTNLKKNIMGVGGLSFNKIVLNLEPMLRIWVHEAVEAAIRSSIHPSSRPSLNRIEASRGRRLQLRFVDKPPSTIFTGSKVEAENGNPIRIILVDATSQAMVSSGSLSSIKVEIVVLNGEFGTDERQDWTENEFNASVLREREGRRPLVTGDLNITLVDGVGTVDNVIFTDNSSWIRCRKFRLGARIVQRSAGEVTIREATSDAFMVKDHRGELYKKHYPPLLHDEVWRLERIAKDGAFHKRLAYKNVHTVKDFLRLLVTDPIALRNILGGGISNRVWETIIEHALSCVPDDDEWYTYHGTAQRVELLLNSIYNVVKVTFDGQDYLPVENLTFSQKLLVEDAKRQAYKNVWNLTPFDRRAIMGPSMPFTDLLPEPVGTSNLLLQQHDFSGTRPDMPLGLNQSSTSFSYEVENPKPLQGIEPLNPMLRNSSFRMEGIFPYNADNSFSFFADDGFGTNQDNTQAQMLSLTSATPAWAQGSGFIFTPDYETSSISFLSSFPSCNVNDRSIGETREVCPKNRWLKVRAVIQWKSISRGAAKRRRQHWLQHGICT
|
External Links
Interpro:
Pfam:
SMART:
KEGG: vda:VDAG_08202
PRINTS: