Effector profile
| PlantPEAD ID: PlantPEAD00459 | Uniprot ID: Q83YM3 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. syringae strain 61 | Other name: |
| Gene name: HopA1 | NCBI Gene ID: EF514224 | |
| Entry name: Q83YM3_PSESY | Protein name: HopA1 | |
| DOI: 10.3390/ijms22147440; 10.1016/j.jsb.2015.02.002 | ||
Gene/Protein information
Gene sequence:
GTGAACCCTATCCATGCACGCTTCTCCAGCGTAGAAGCGCTCAGACATTCAAACGTTGATATTCAGGCAATCAAATCCGAGGGTCAGTTGGAAGTCAACGGCAAGCGTTACGAGATTCGTGCGGCCGCTGACGGCTCAATCGCGGTCCTCAGACCCGATCAACAGTCCAAAGCAGACAAGTTCTTCAAAGGCGCAGCGCATCTTATTGGCGGACAAAGCCAGCGTGCCCAAATAGCCCAGGTACTCAACGAGAAAGCGGCGGCAGTTCCACGCCTGGACAGAATGTTGGGCAGACGCTTCGATCTGGAGAAGGGCGGAAGTAGCGCTGTGGGCGCCGCAATCAAGGCTGCCGACAGCCGACTGACATCAAAACAGACATTTGCCAGCTTCCAGCAATGGGCTGAAAAAGCTGAGGCGCTCGGGCGCGATACCGAAATCGGTATCTACATGATCTACAAGAGGGACACGCCAGACACAACGCCTATGAATGCGGCAGAGCAAGAACATTACCTGGAAACGCTACAGGCTCTCGATAACAAGAAAAACCTTATCATACGCCCGCAGATCCATGATGATCGGGAAGAGGAAGAGCTTGATCTGGGCCGATACATCGCTGAAGACAGAAATGCCAGAACCGGCTTTTTTAGAATGGTTCCTAAAGACCAACGCGCACCTGAGACAAACTCGGGACGACTTACCATTGGTGTAGAACCTAAATATGGAGCGCAGTTGGCCCTCGCAATGGCAACCCTGATGGACAAGCACAAATCTGTGACACAAGGTAAAGTCGTCGGTCCGGCAAAATATGGCCAGCAAACTGACTCTGCCATTCTTTACATAAATGGTGATCTTGCAAAAGCAGTAAAACTGGGCGAAAAGCTGAAAAAGCTGAGCGGTATCCCTCCTGAAGGATTCGTCGAACATACACCGCTAAGCATGCAGTCGACGGGTCTCGGTCTTTCTTATGCCGAGTCGGTTGAAGGGCAGCCTTCCAGCCACGGACAGGCGAGAACACACGTTATCATGGATGCCTTGAAAGGCCAGGGCCCCATGGAGAACAGACTCAAAATGGCGCTGGCAGAAAGAGGCTATGACCCGGAAAATCCGGCGCTCAGGGCGCGAAACTGA
Protein sequence:
MNPIHARFSSVEALRHSNVDIQAIKSEGQLEVNGKRYEIRAAADGSIAVLRPDQQSKADKFFKGAAHLIGGQSQRAQIAQVLNEKAAAVPRLDRMLGRRFDLEKGGSSAVGAAIKAADSRLTSKQTFASFQQWAEKAEALGRDTEIGIYMIYKRDTPDTTPMNAAEQEHYLETLQALDNKKNLIIRPQIHDDREEEELDLGRYIAEDRNARTGFFRMVPKDQRAPETNSGRLTIGVEPKYGAQLALAMATLMDKHKSVTQGKVVGPAKYGQQTDSAILYINGDLAKAVKLGEKLKKLSGIPPEGFVEHTPLSMQSTGLGLSYAESVEGQPSSHGQARTHVIMDALKGQGPMENRLKMALAERGYDPENPALRARN
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 41186.6 | 375 | 8.96 | -0.58 | 33.75 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
Q9SU72
|
Protein EDS1
|
EDS1
|
Arabidopsis thaliana (related: thale cress)
|
MAFEALTGINGDLITRSWSASKQAYLTERYHKEEAGAVVIFAFQPSFSEKDFFDPDNKSSFGEIKLNRVQFPCMRKIGKGDVATVNEAFLKNLEAIIDPRTSFQASVEMAVRSRKQIVFTGHSSGGATAILATVWYLEKYFIRNPNVYLEPRCVTFGAPLVGDSIFSHALGREKWSRFFVNFVSRFDIVPRIMLARKASVEETLPHVLAQLDPRKSSVQESEQRITEFYTRVMRDTSTVANQAVCELTGSAEAFLETLSSFLELSPYRPAGTFVFSTEKRLVAVNNSDAILQMLFYTSQASDEQEWSLIPFRSIRDHHSYEELVQSMGKKLFNHLDGENSIESTLNDLGVSTRGRQYVQAALEEEKKRVENQKKIIQVIEQERFLKKLAWIEDEYKPKCQAHKNGYYDSFKVSNEENDFKANVKRAELAGVFDEVLGLMKKCQLPDEFEGDIDWIKLATRYRRLVEPLDIANYHRHLKNEDTGPYMKRGRPTRYIYAQRGYEHYILKPNGMIAEDVFWNKVNGLNLGLQLEEIQETLKNSGSECGSCFWAEVEELKGKPYEEVEVRVKTLEGMLGEWITDGEVDDKEIFLEGSTFRKWWITLPKNHKSHSPLRDYMMDEITDT
|
External Links
Interpro: IPR040871
Pfam: PF17914
SMART:
KEGG:
PRINTS: