Effector profile
| PlantPEAD ID: PlantPEAD00498 | Uniprot ID: G2X4M1 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 27337 | Pathogen type: Fungi |
| Species: Verticillium dahliae | Strain: strain VdLs.17 / ATCC MYA-4575 / FGSC 10137 | Other name: Verticillium wilt |
| Gene name: VdIsc1 | NCBI Gene ID: XM_009654839 | |
| Entry name: ISC1_VERDV | Protein name: Secreted isochorismatase effector Isc1 | |
| DOI: 10.1038/ncomms5686 | ||
Gene/Protein information
Gene sequence:
ATGTCCTCATTCCGCTCCATGCTCGGCGTGCCGCCGTCCACGGCCTCCACCCAGGACAGTGTCCTCGTCATCATCGACGCCCAGGGCGAATACGCCGAGGGCAAGCTCAAGATTTCCAACATTGAGGCGTCGCGCCCCAACATCTCTTCCCTGCTGGAGAAGTACCGCGCCGCCAACGCGCCCATCGTCCACGTCGTCCACGAGACGCCCGCCGGCGCCCCTCTCTTCACGCAGGGCACGAAGCTCGCTGAGATCTTCGACGAGCTCACGCCCAAGGAAGGCGAGGCTGTCGTGACGAAGCACCACCCCGGTTCATTCGCCGACACCAACCTTCAGGAGATCCTGGAGAAGTCCGGCAAGAAGAAGATTGTGCTCGTCGGGTACATGGCTCACGTCTGCGTCTCGACGACGGCCAGGCAGGGCGCGCAGAGGGGCTGGGATGTCATCGTTGCCGAGGACGCTGTCGGTGACAGGGACATTCCCGGCGTGGATGCTGCGCAGCTTGTGAAGGTTGCTCTGGCTGAGATTGCTGATGTCTTTGGCACTCTTGTCTCGAGCAAGGATATCAACTAG
Protein sequence:
MSSFRSMLGVPPSTASTQDSVLVIIDAQGEYAEGKLKISNIEASRPNISSLLEKYRAANAPIVHVVHETPAGAPLFTQGTKLAEIFDELTPKEGEAVVTKHHPGSFADTNLQEILEKSGKKKIVLVGYMAHVCVSTTARQGAQRGWDVIVAEDAVGDRDIPGVDAAQLVKVALAEIADVFGTLVSSKDIN
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 20192 | 190 | 5.35 | -0.015 | 32.63 |
Plant infestation information
| Experimental plant: Gossypium hirsutum (related: cotton) | |
| Susceptible plant: Gossypium hirsutum, Lactuca sativa, Solanum lycopersicum | Disease name: Vascular wilt |
| Host classification: Eudicots | NCBI Species: 3635, 4236, 4081 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR000868,IPR036380
Pfam: PF00857
SMART:
KEGG: vda:VDAG_05103
PRINTS: