Effector profile
PlantPEAD ID: PlantPEAD00516 Uniprot ID: D0NBE6 Source: Article
Localization: Cytoplasmic(Exp) Pathogen taxonomy ID: 4787 Pathogen type: Oomycota
Species: Phytophthora infestans Strain: strain T30-4 Other name: Potato late blight agent, Botrytis infestan
Gene name: PexRD54 NCBI Gene ID: XM_002903553
Entry name: RD54_PHYIT Protein name: RxLR effector protein 54
DOI: 10.1074/jbc.M116.744995
Gene/Protein information
Gene sequence:
ATGCGTTTCCAGAGCATTATGATGCTGACTATTACATGTGCCGGTACATGTTTAGCGGAAGGTCTAGCTCCCTCTGATCAAGCTTACAGGCCGACGATGACTGGTCTCAAATCGAGACTCAATGACCCCCGCCCTCTCTCCACGGCCACGATTGCAACCTCCTCGGAAAGATTCCTAAGATTCGACACAGTCGCTCGGGATACGGCTGGCAACGACGAAGAGAGGGTTGGTCCCTCTTGGCTAGCGAAAGTCGACGGTCTGATGCATAAAATGGTCACGTCCAGTTTGTCTGCGGAAGAAGCGCAGCTCAAAGTGTGGATACAGTCCCAAATACATCCACGCGAGTTATTCGGGGTCTTAAGTCTTGGCAAGCGTGCAGCAAAGTTGGATGATAATCCGGATTTCGTGCAGTGGCTCAGGCTTGTAAAGGACTTCCGAGCTAATAACGGGAACCAGGCGTTTTCAGATCTGGACATTTACTATCTGCTTCTGAAGACAAATAGTCCAGAGCAGTTGAAATTACTTTTCGAAACTCTTCGGCATACTCCCGGAATGACCAAGATCGGGGCGAGTATGGAGAAGTCTTTATCTGGAAATTGGATTCGCAAAGCCCTAGAACAGGATACGTATCCAACGATCGTTTACAATACGCTTCGTCTTAAAGACGCTGGCACAAAGCTGGATGATACGCCAATGTTCCGTCAGTGGCTGGAGTATGTAGAGAAGTACTGGAACAAGAATGCGGGCGCTTTCTTCGGGGACACACAAATGTTGACGTTGTTTCAGAAGACAATGACAGAAGAAGAAGACATCATAAAACTAGTTCACATGCTTCGAAACAACCCGGGGATGAAGAGTCACGCCGATAAATTGGAGAGGTATTTGCTTCTGACGTCTGAATCGAGCCACAAAACGATGGCTGACGTGTGGCTGAAGGCCCGAGAAACTCCAGAGGAAGTGTTTCGTATTCTACGTTTGGCAGAAAAGCAAACTGCCGCCGCTGATGACAACCGAATGTTGAATCTGTGGCTCAGGTACACCCAAACGTACCGGGACAAAATTGACAAGAACGCCTTCTCCGACGCGGAAGCACTGCAGTTTTTCAGGAAGGCCAAACCGCTGGATTTCGACTGGGAAATTGTGTAA
Protein sequence:
MRFQSIMMLTITCAGTCLAEGLAPSDQAYRPTMTGLKSRLNDPRPLSTATIATSSERFLRFDTVARDTAGNDEERVGPSWLAKVDGLMHKMVTSSLSAEEAQLKVWIQSQIHPRELFGVLSLGKRAAKLDDNPDFVQWLRLVKDFRANNGNQAFSDLDIYYLLLKTNSPEQLKLLFETLRHTPGMTKIGASMEKSLSGNWIRKALEQDTYPTIVYNTLRLKDAGTKLDDTPMFRQWLEYVEKYWNKNAGAFFGDTQMLTLFQKTMTEEEDIIKLVHMLRNNPGMKSHADKLERYLLLTSESSHKTMADVWLKARETPEEVFRILRLAEKQTAAADDNRMLNLWLRYTQTYRDKIDKNAFSDAEALQFFRKAKPLDFDWEIV
Protein structure:
PDB(X-ray)(5L7S)
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
43859.2 381 7.71 -0.46 28.38
Plant infestation information
Experimental plant:
Susceptible plant: Solanum lycopersicum, Solanum tuberosum Disease name: Late blight
Host classification: Eudicots NCBI Species: 4081, 4113
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
M1C146
Autophagy-related protein 8C-like
ATG8CL
Solanum tuberosum (related: related: potato)
MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEHKDEDGFLYMTYSGENTFGSF