Effector profile
PlantPEAD ID: PlantPEAD00516 | Uniprot ID: D0NBE6 | Source: Article |
Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 4787 | Pathogen type: Oomycota |
Species: Phytophthora infestans | Strain: strain T30-4 | Other name: Potato late blight agent, Botrytis infestan |
Gene name: PexRD54 | NCBI Gene ID: XM_002903553 | |
Entry name: RD54_PHYIT | Protein name: RxLR effector protein 54 | |
DOI: 10.1074/jbc.M116.744995 |
Gene/Protein information
Gene sequence:
ATGCGTTTCCAGAGCATTATGATGCTGACTATTACATGTGCCGGTACATGTTTAGCGGAAGGTCTAGCTCCCTCTGATCAAGCTTACAGGCCGACGATGACTGGTCTCAAATCGAGACTCAATGACCCCCGCCCTCTCTCCACGGCCACGATTGCAACCTCCTCGGAAAGATTCCTAAGATTCGACACAGTCGCTCGGGATACGGCTGGCAACGACGAAGAGAGGGTTGGTCCCTCTTGGCTAGCGAAAGTCGACGGTCTGATGCATAAAATGGTCACGTCCAGTTTGTCTGCGGAAGAAGCGCAGCTCAAAGTGTGGATACAGTCCCAAATACATCCACGCGAGTTATTCGGGGTCTTAAGTCTTGGCAAGCGTGCAGCAAAGTTGGATGATAATCCGGATTTCGTGCAGTGGCTCAGGCTTGTAAAGGACTTCCGAGCTAATAACGGGAACCAGGCGTTTTCAGATCTGGACATTTACTATCTGCTTCTGAAGACAAATAGTCCAGAGCAGTTGAAATTACTTTTCGAAACTCTTCGGCATACTCCCGGAATGACCAAGATCGGGGCGAGTATGGAGAAGTCTTTATCTGGAAATTGGATTCGCAAAGCCCTAGAACAGGATACGTATCCAACGATCGTTTACAATACGCTTCGTCTTAAAGACGCTGGCACAAAGCTGGATGATACGCCAATGTTCCGTCAGTGGCTGGAGTATGTAGAGAAGTACTGGAACAAGAATGCGGGCGCTTTCTTCGGGGACACACAAATGTTGACGTTGTTTCAGAAGACAATGACAGAAGAAGAAGACATCATAAAACTAGTTCACATGCTTCGAAACAACCCGGGGATGAAGAGTCACGCCGATAAATTGGAGAGGTATTTGCTTCTGACGTCTGAATCGAGCCACAAAACGATGGCTGACGTGTGGCTGAAGGCCCGAGAAACTCCAGAGGAAGTGTTTCGTATTCTACGTTTGGCAGAAAAGCAAACTGCCGCCGCTGATGACAACCGAATGTTGAATCTGTGGCTCAGGTACACCCAAACGTACCGGGACAAAATTGACAAGAACGCCTTCTCCGACGCGGAAGCACTGCAGTTTTTCAGGAAGGCCAAACCGCTGGATTTCGACTGGGAAATTGTGTAA
Protein sequence:
MRFQSIMMLTITCAGTCLAEGLAPSDQAYRPTMTGLKSRLNDPRPLSTATIATSSERFLRFDTVARDTAGNDEERVGPSWLAKVDGLMHKMVTSSLSAEEAQLKVWIQSQIHPRELFGVLSLGKRAAKLDDNPDFVQWLRLVKDFRANNGNQAFSDLDIYYLLLKTNSPEQLKLLFETLRHTPGMTKIGASMEKSLSGNWIRKALEQDTYPTIVYNTLRLKDAGTKLDDTPMFRQWLEYVEKYWNKNAGAFFGDTQMLTLFQKTMTEEEDIIKLVHMLRNNPGMKSHADKLERYLLLTSESSHKTMADVWLKARETPEEVFRILRLAEKQTAAADDNRMLNLWLRYTQTYRDKIDKNAFSDAEALQFFRKAKPLDFDWEIV
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Main properties of effector
Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
---|---|---|---|---|
43859.2 | 381 | 7.71 | -0.46 | 28.38 |
Plant infestation information
Experimental plant: | |
Susceptible plant: Solanum lycopersicum, Solanum tuberosum | Disease name: Late blight |
Host classification: Eudicots | NCBI Species: 4081, 4113 |
Pathogen-plant protein interaction
Uniprot ID | Protein name | Gene name | Species | Protein sequence |
---|---|---|---|---|
M1C146
|
Autophagy-related protein 8C-like
|
ATG8CL
|
Solanum tuberosum (related: related: potato)
|
MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEHKDEDGFLYMTYSGENTFGSF
|
External Links
Interpro: IPR040786
Pfam: PF18634
SMART:
KEGG: pif:PITG_09316
PRINTS: