Effector profile
PlantPEAD ID: PlantPEAD00568 | Uniprot ID: D0MRS3 | Source: Article |
Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 4787 | Pathogen type: Oomycota |
Species: Phytophthora infestans | Strain: strain T30-4 | Other name: Potato late blight agent, Botrytis infestan |
Gene name: PexRD21(PITG_00821) | NCBI Gene ID: XM_002909332 | |
Entry name: RD21_PHYIT | Protein name: RxLR effector protein PexRD21 | |
DOI: 10.1093/jxb/ery360 |
Gene/Protein information
Gene sequence:
ATGCGCCTTAGTTACATCCTCGTAGTGGTGATTGCAGTCACTCTACAGGCCTGCGTCTGTGCTACCCCCGTCATAAAAGAAGCGAACCAGGCCATGCTCGCTAATGGACCACTACCTAGCATCGTCAATACGGAGGGTGGGCGACTTTTGCGTGGCGTCAAGAAGCGTACAGCGGAGAGAGAAGTGCAGGAAGAGAGGATGTCTGGCGCGAAACTCAGCGAAAAGGGGAAACAATTCTTAAAATGGTTTTTTCGTGGCAGCGATACACGCGTTAAAGGCAGAAGCTGGAGATAA
Protein sequence:
MRLSYILVVVIAVTLQACVCATPVIKEANQAMLANGPLPSIVNTEGGRLLRGVKKRTAEREVQEERMSGAKLSEKGKQFLKWFFRGSDTRVKGRSWR
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Main properties of effector
Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
---|---|---|---|---|
10862.8 | 97 | 10.48 | -0.21 | 35.86 |
Plant infestation information
Experimental plant: Nicotiana benthamiana (no common name found) | |
Susceptible plant: Solanum lycopersicum, Solanum tuberosum | Disease name: Late blight |
Host classification: Eudicots | NCBI Species: 4081, 4113 |
Pathogen-plant protein interaction
Uniprot ID | Protein name | Gene name | Species | Protein sequence |
---|
No Record found.
External Links
Interpro: IPR031825
Pfam: PF16810
SMART:
KEGG: pif:PITG_00821
PRINTS: