Effector profile
| PlantPEAD ID: PlantPEAD00575 | Uniprot ID: D0N4Y1 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 4787 | Pathogen type: Oomycota |
| Species: Phytophthora infestans | Strain: strain T30-4 | Other name: Potato late blight agent, Botrytis infestan |
| Gene name: PexRD18(PITG_06478) | NCBI Gene ID: XM_002998540 | |
| Entry name: RD18_PHYIT | Protein name: RxLR effector protein PexRD18 | |
| DOI: 10.1038/nature06203; 10.1038/nature08358; 10.1371/journal.ppat.1004057; 10.1093/jxb/ery360 | ||
Gene/Protein information
Gene sequence:
ATGAGCCACCAGAGAATACTTCTGCTGCTTATGGCTGCCTTCTTCGCTTGGGTTTCTGCGCAAACACCCCCTGGACAAGCCGACAAGTCGAAGCTGATTGCTCACGATGTTCTCATGAAGACCACGTCACTGTCAGAAACCACAATTGCTACTTCATCTAAGCGGTTCTTGAGGCTCTACGACGCAGAAGTCCGAGATACAGTCCGCGGAGATAATGACGTAGACCGCGAGGAGAGAGGAACTACGCCGTTGTTATCGAAGGTCGACGATCTGATACACAAAGTATTTAAATCCAATCCGGAGCAAGCACAAATCAAGGCGTGGATGAAGTCTCGAGTGCACCCTCAAGCGATTTTTGATACTTTGCGTCTAGCAAAGAGTACGACGAAACTGAACGATGACCCGAATCTTCTCCTTTGGCTCAAGCTCGTTGCTGCTTTTAGAGCTAAGAATGGTAACCAGGCGTTTTCGGATCTGGATCTTTACTACTTGCTACTGAAGAGAAGCAGTGGCGAAGAGCTGAAAATACTTATTGAGTCTTTTCGGAAGACTGGAGCCTTAAAGGAGCTAGGCAAAAGTATGCAGAAATCGCTATCTGGTTCGTGGGTGTCAAAAACCTTACAGCACGAAACAGATCCAAAAATTGTTTACGATACATTACGTCTTCAAGAGGCTGGCACGAAACTGGTCGATTCGCCAATCTTTCATCAGTGGCTGGCCTACGCGCAGCAGTATCGGGCGCAGAAGGGGAATCACTGGTTCGGAGACGACGATATGCTCGACCTGTTTCGAAAAACCATGCCGGAAAAAGACGTGGTAACGCTTCTGCATTTGCTTCGAAACGTCCCGGGCATGAAAGATCATGGCGATACGATGCAGCGGTTCTTGTTTTTATCGTCTAAAACCAGCCGAAAAATGATGCACGACGTGTGGCTGAACTACGACGTAACGCCCGAACAAGTTTTCAAGATTTTACGCTTGGTAAAGGTCAATATGGACGCTGTGGATACGAACGCAATGTTTATACATTGGCTTAGGTACGTCAACTTGTACAGGAGCCACACAAAAAAGAACGTTTTATCCAGCGTACAAATGGTGCATTTCCTTGCGGACACCAAACCGTTGCGGTCAGAGTGGCAATTTGCCACATTTTTTGAATCGCTCAAGGACGTCCCTGATTTGAAGAGGCTGGCTGAAAACATGCAAACTTACCTATTCCAAAACTGGCTGCACACGGAGTGGGACCCGAAGGCTGTGTCGAGTATGCTGGCCATTCCTTTTCCTACGAGTGCTGTGTATCTGCCGAAGAACGATCCCATTTACAAGACTTGGGTGGCGTACACCCTTTACTATACAGAGAGGAAGGGCGGGGTGTCGTTGCTAAATAAAGTGAAGACACTGCTCGACAACGACAACCCTATCGGCGCACTTACCGCAGCTATGAAAGCTCAGTGA
Protein sequence:
MSHQRILLLLMAAFFAWVSAQTPPGQADKSKLIAHDVLMKTTSLSETTIATSSKRFLRLYDAEVRDTVRGDNDVDREERGTTPLLSKVDDLIHKVFKSNPEQAQIKAWMKSRVHPQAIFDTLRLAKSTTKLNDDPNLLLWLKLVAAFRAKNGNQAFSDLDLYYLLLKRSSGEELKILIESFRKTGALKELGKSMQKSLSGSWVSKTLQHETDPKIVYDTLRLQEAGTKLVDSPIFHQWLAYAQQYRAQKGNHWFGDDDMLDLFRKTMPEKDVVTLLHLLRNVPGMKDHGDTMQRFLFLSSKTSRKMMHDVWLNYDVTPEQVFKILRLVKVNMDAVDTNAMFIHWLRYVNLYRSHTKKNVLSSVQMVHFLADTKPLRSEWQFATFFESLKDVPDLKRLAENMQTYLFQNWLHTEWDPKAVSSMLAIPFPTSAVYLPKNDPIYKTWVAYTLYYTERKGGVSLLNKVKTLLDNDNPIGALTAAMKAQ
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 55782.5 | 484 | 9.42 | -0.343 | 28.38 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Solanum lycopersicum, Solanum tuberosum | Disease name: Late blight |
| Host classification: Eudicots | NCBI Species: 4081, 4113 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR040786
Pfam: PF18634
SMART:
KEGG: pif:PITG_06478
PRINTS: