Effector profile
| PlantPEAD ID: PlantPEAD00601 | Uniprot ID: D0NYM3 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 4787 | Pathogen type: Oomycota |
| Species: Phytophthora infestans | Strain: strain T30-4 | Other name: Potato late blight agent, Botrytis infestan |
| Gene name: RxLR24(PITG_18405) | NCBI Gene ID: NW_003303687 | |
| Entry name: RLR24_PHYIT | Protein name: RxLR effector protein 24 | |
| DOI: 10.1111/tpj.13928 | ||
Gene/Protein information
Gene sequence:
ATGCGGTTTTTAGTGTGGGTCTTCTTTGTGGGCCTGGTAACCTTCGTTTCCGGTACCCATGCTATCTCTAAGCTCGCCAACTCGAATGAGCCCCAATCTACACAGTTAACGATGAAGGACATTGACACATTGACCCGTCTACTCTTCGTCGAGGACGGTGATGCCGCCAAGCGATTCCTGCGAAGCAACGCAAATCAAGATTTGACGACAGCTAACGACGATTCGGATGTCAAGGAGGAGGAGAGAGGACTTCTCCCGTCGAAGGTTACAAACTTGATCTCGAAGGCGAAGAACGGCTGGGCTAAGTGGAAGGCGAACGCGTTGGAGAAGGCTTTTCAGCATATGATGAAGCAGGGAGAAACCCCCACGTCATTAGCAAAGCGTTTGGAGATTGGAGGAGCTGCCGAACTCAGATACGAGAAGGTCTACGAGAAATATACGGCCTGGTGGATCAACTATCACACCGTTGCCGGAACTTAA
Protein sequence:
MRFLVWVFFVGLVTFVSGTHAISKLANSNEPQSTQLTMKDIDTLTRLLFVEDGDAAKRFLRSNANQDLTTANDDSDVKEEERGLLPSKVTNLISKAKNGWAKWKANALEKAFQHMMKQGETPTSLAKRLEIGGAAELRYEKVYEKYTAWWINYHTVAGT
Loading ...
Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 17973.5 | 159 | 8.78 | -0.409 | 25.55 |
Plant infestation information
| Experimental plant: Solanum tuberosum (related: potato) | |
| Susceptible plant: Solanum lycopersicum, Solanum tuberosum | Disease name: Late blight |
| Host classification: Eudicots | NCBI Species: 4081, 4113 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
P28185
|
Ras-related protein RABA1a
|
RABA1A
|
Arabidopsis thaliana (related: thale cress)
|
MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINVKEDGSVLKRMGCCSN
|
|
O04486
|
Ras-related protein RABA2a
|
RABA2A
|
Arabidopsis thaliana (related: thale cress)
|
MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCSSS
|
|
Q9FJN8
|
Ras-related protein RABA4a
|
RABA4A
|
Arabidopsis thaliana (related: thale cress)
|
MTSGGGYGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVIILIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKSLAASEDQENGNPGSLAGKKIDIVPGPGQVIPNKSNMCCNS
|
|
RABA1a
|
Solanum tuberosum (related: related: potato)
|
MAGYRGDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVNRWLKELRDHTDPNIVVMLLGNKSDLRHLVAVSTDEAKSLAEREALYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGQTINIKDEGSAWKKFGCCSS
|
||
|
RABA2a
|
Solanum tuberosum (related: related: potato)
|
MARRAEEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFLLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSFAEKEGLSFIETSALEATNVEKSFQTILSEIYRIISKKPLSSEEPATANIKEGKTLVVGAEEPAPKKACCSA
|
||
|
RABA4a
|
Solanum tuberosum (related: related: potato)
|
MASGGGYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQRKSVKAQIWDTAGQERYRAVTSAYYRGAVGALLVYDITKRQTFDHIPRWLEELRAHADKNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNVEDAFLTVLTEIFNIVNKKNLAAGDDQANGNPASLTGKKILVPGPAQVIPEKKACCSS
|
External Links
Interpro:
Pfam:
SMART:
KEGG: pif:PITG_18405
PRINTS: