Effector profile
| PlantPEAD ID: PlantPEAD00680 | Uniprot ID: D0NPE9 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 4787 | Pathogen type: Oomycota |
| Species: Phytophthora infestans | Strain: strain T30-4 | Other name: Potato late blight agent, Botrytis infestan |
| Gene name: CRE12(PITG_14960) | NCBI Gene ID: XM_002899081 | |
| Entry name: CRE12_PHYIT | Protein name: RxLR effector protein CRE12 | |
| DOI: 10.1038/nature08358; 10.3389/fpls. 2017.02155 | ||
Gene/Protein information
Gene sequence:
ATGCGACTGGCAGCTTTTGTTTTGGTGGCTGTAGCATTTGCGATCATTCCTGATGGACGAGTCTCCGCGGCAGCACTCGGACCTCCCGAGAGCAGTGAAGGTACTCACGAAAAAGCAAGATTGTTGCGGTTGAATGCTGTGCCACAGCCTGTGGAAACCGGCAACCAAGAAGAAAGGACAATTAACTTCGCGTCGATTAAGAAGATTGTTCCGGGTACAAGCGCCTTTAAAAACGCACAAGCACTTAAGGCGTCTCAAAAGGCAGCACTGAAGGCCCAGGATGCGGCTAAAAGGAAAGCTGCCGTTGACAAGTGGTTCAAACAATTCGAAAGCGATGAATTTCTGTTTACAGCTGCGTTCCCCTCTTGGGTCAGAAAGAAAATGCACCCCGACAAAGTCCGAGAATACTTCGCTTCGCTTGGCAAGTCGGGCGATGACGTCAGTATGATCGTCAAGCGTTACGACAATTACCGCCAAACAATACCCACGAAGAAGTAG
Protein sequence:
MRLAAFVLVAVAFAIIPDGRVSAAALGPPESSEGTHEKARLLRLNAVPQPVETGNQEERTINFASIKKIVPGTSAFKNAQALKASQKAALKAQDAAKRKAAVDKWFKQFESDEFLFTAAFPSWVRKKMHPDKVREYFASLGKSGDDVSMIVKRYDNYRQTIPTKK
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 18268.1 | 165 | 9.95 | -0.37 | 29.25 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Solanum lycopersicum, Solanum tuberosum | Disease name: Late blight |
| Host classification: Eudicots | NCBI Species: 4081, 4113 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG: pif:PITG_14960
PRINTS: