Effector profile
PlantPEAD ID: PlantPEAD00832 Uniprot ID: Q87UE5 Source: Article
Localization: Cytoplasmic(Exp) Pathogen taxonomy ID: 317 Pathogen type: Bacteria
Species: Pseudomonas syringae Strain: pv. tomato strain ATCC BAA-871 / DC3000 Other name: Pseudomonas syringae tomato
Gene name: HopA1 NCBI Gene ID: AE016853
Entry name: Q87UE5_PSESM Protein name: Type III effector HopA1
DOI: 10.1016/j.jsb.2015.02.002
Gene/Protein information
Gene sequence:
ATGAACCCCATTCAGTCACGCTTCTCCAGTGTGCAAGAGCTCAGACGATCCAACGTTGATATTCCGGCGCTCAAAGCCAATGGCCAACTGGAGGTCGACGGCAAGAGGTACGAGATTCGTGCAGCCGATGACGGAACAATTTCGGTCCTTCGACCGGAGCAACAATCCAAAGCGAAAAGTTTTTTCAAGGGCGCTTCCCAGTTGATAGGTGGCAGCAGCCAGCGCGCGCAGATTGCCCAGGCGCTCAACGAGAAGGTCGCATCGGCACGCACTGTCTTGCACCAGAGCGCTATGACGGGCGGACGCTTGGACACCCTTGAGCGGGGCGAAAGCAGCTCAGCCACAACAGCCATCAAACCCACTGCCAAACAGGCTGCGCAAAGTACTTTTAACAGCTTTCATGAGTGGGCCAAACAGGCAGAGGCGATGCGAAACCCGTCTCGAATGGATATCTACAAGATCTATAAACAAGATGCACCTCACTCACACCCCATGAGCGACGAGCAGCAAGAAGAGTTCCTGCACACGCTAAAGGCATTGAATGGCAAAAACGGCATTGAGGTGCGCACTCAGGACCACGACAGCGTCAGAAATAAAAAAGACCGCAACCTGGACAAGTACATCGCAGAGAGCCCGGATGCAAAGAGGTTTTTCTATCGAATTATCCCCAAACATGAGCGCCGAGAAGATAAGAATCAAGGGCGATTGACCATTGGCGTGCAACCCCAATATGCAACACAGTTGACCCGCGCCATGGCAACCCTGATAGGGAAGGAAAGTGCAATCACGCATGGCAAAGTAATAGGCCCCGCCTGCCACGGCCAAATGACCGATTCGGCAGTTTTGTATATCAACGGTGATGTTGCAAAGGCAGAAAAGCTGGGCGAGAAACTGAAACAGATGAGCGGCATTCCTCTGGATGCGTTCGTTGAGCACACCCCTTTGAGCATGCAATCCCTGAGTAAAGGTCTGTCCTATGCAGAAAGCATCCTGGGCGACACCAGAGGCCATGGGATGTCGCGAGCGGAAGTGATCAGCGATGCCTTGAGGATGGACGGGATGCCATTTCTGGCCAGATTGAAGCTATCACTGTCTGCCAATGGCTATGACCCGGACAACCCGGCCCTTCGAAACACGAAATGA
Protein sequence:
MNPIQSRFSSVQELRRSNVDIPALKANGQLEVDGKRYEIRAADDGTISVLRPEQQSKAKSFFKGASQLIGGSSQRAQIAQALNEKVASARTVLHQSAMTGGRLDTLERGESSSATTAIKPTAKQAAQSTFNSFHEWAKQAEAMRNPSRMDIYKIYKQDAPHSHPMSDEQQEEFLHTLKALNGKNGIEVRTQDHDSVRNKKDRNLDKYIAESPDAKRFFYRIIPKHERREDKNQGRLTIGVQPQYATQLTRAMATLIGKESAITHGKVIGPACHGQMTDSAVLYINGDVAKAEKLGEKLKQMSGIPLDAFVEHTPLSMQSLSKGLSYAESILGDTRGHGMSRAEVISDALRMDGMPFLARLKLSLSANGYDPDNPALRNTK
Protein structure:
PDB(X-ray)(4RSX)
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
41989.4 380 9.45 -0.658 43.37
Plant infestation information
Experimental plant: Solanum lycopersicum (related: tomato)
Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana Disease name: Bacterial speck
Host classification: Eudicots NCBI Species: 4081, 3702
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
Q9ZV25
Probable protein phosphatase 2C 23
PLL4
Arabidopsis thaliana (related: thale cress)
MGNGIGKLSKCLTGGAGRNKKPELSILEPDPLDEGLGHSFCYVRPDPTRVSSSKVHSEEETTTFRTISGASVSANTATPLSTSLYDPYGHIDRAAAFESTTSFSSIPLQPIPRSSGPIVPGSGPLERGFLSGPIERGFMSGPLDGSSGPIDGKTGSDQFQRSFSHGLANLRVGSRKGSLVRVLRRAISKTITRGQNSIVAPIKPVKEPDWVFGSDKTRIHQIENNLTVNSLNFSSEGSLLDDDVSLESQNLQWAQGKAGEDRVHVVVSEEHGWLFVGIYDGFNGPDAPDYLLSHLYPAVHRELKGLLWDDPKTDAKSSDEADVENRDSSSEKKSKNWEESQRRWRCEWDRDLDRLLKDRSNGLDLDPDPNSSDVLKALSQALRKTEEAYLENADMMLDENPELALMGSCVLVMLMKGEDVYLMNVGDSRAVLGQKAESDYWIGKIKQDLERINEETMNDFDGCGDGEGASLVPTLSAFQLTVDHSTNVEEEVNRIRKEHPDDASAVSNERVKGSLKVTRAFGAGFLKQPKWNNALLEMFQIDYKGTSPYINCLPSLYHHRLGSKDQFLILSSDGLYQYFTNEEAVSEVELFITLQPEGDPAQHLVQELLFRAAKKAGMDFHELLEIPQGERRRYHDDVSIVVISLEGRMWKSCV