Effector profile
| PlantPEAD ID: PlantPEAD00843 | Uniprot ID: A0A345Z0U3 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 36090 | Pathogen type: Nematoda |
| Species: Globodera pallida | Strain: | Other name: Potato cyst nematode |
| Gene name: SPRY-414-2 | NCBI Gene ID: MH003298 | |
| Entry name: A0A345Z0U3_GLOPA | Protein name: SPRYSEC effector SPRY-414-2 | |
| DOI: 10.3389/fpls.2018.01019 | ||
Gene/Protein information
Gene sequence:
TGGCCGCCAAAAACGACATCAAACAACAACCCAGGGCTAACTACTGGAAATAAATGGGATTCAAAAGCCGATTCGTGTCACCGGGACCTGACGCTCTCGGAGCCCGATCAATTGACTGCCAAGGTTACAGGAAAGAATTTGGGGTATCGCAGCGCTGTCTTCGCTGTTCAGTCAGTTCCACAAATTAATTCCGGCATTTTCTACTACGAAGTGGAAATAAAAGGGAGAGTAGGTTACATCTCCATTGGACTTGCGACCAAACAAATGGCATTGAACAACGAAGTTGGAGAATTTCAAGGCTACGCATACCACTTCGGCGACGGTTTTCGTCGCCACGAGGCGGAGGGATGTTCCTACACGCACAACGTCAAACGTCCTTACTACAATAAAGGAATATCACGGTATGGTGTCGGCAACGTCATCGGATGCGGCGTGGATTTAGCAAAGCGCAAAATCTTTTACACGCTGGACGGCCAGCGTTTGGGTCCTGCCGGTTTGTTAGCCGATTCTGCCGACCCATTGTATCCATGCGTTTCGTTGTCACACCGTGGCGACATAATTGCAGCGAACTTTGGAGCGGACTTCCTATTCAAATTCGACATTGCCAAATGGAATTTAGAAACTGAAAAATGA
Protein sequence:
WPPKTTSNNNPGLTTGNKWDSKADSCHRDLTLSEPDQLTAKVTGKNLGYRSAVFAVQSVPQINSGIFYYEVEIKGRVGYISIGLATKQMALNNEVGEFQGYAYHFGDGFRRHEAEGCSYTHNVKRPYYNKGISRYGVGNVIGCGVDLAKRKIFYTLDGQRLGPAGLLADSADPLYPCVSLSHRGDIIAANFGADFLFKFDIAKWNLETEK
Loading ...
Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 23200.1 | 210 | 8.59 | -0.41 | 31.22 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Solanum tuberosum | Disease name: Potato cyst |
| Host classification: Eudicots | NCBI Species: 4113 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
A0A345Z0U2
|
CLASP
|
Solanum tuberosum (related: related: potato)
|
SAELYEDLIKCCVGDAMSEVRSTARTLYRMFARTWPERSRRLFMSFDPVIQRIINEEDGGTNRRHASPSVRERSSHFSLGSQTSASSQISGYGTSAIVAMDRSSSLPSGTSLSTGLLLSQTKPVGTGTERSLESVLHASKQKVSAIESLLKGLDMSERSRSSSLDLGVDPPSSRDPPFPLAVPASNSLANALVDAPSGFSKGKNRNGGLGLSDIITQIQASKDSTKSSYRGSAVHESFSGLNSYSARRASEKLPDRGFVEDNAELREGRRLMNSHVHRQYIESPYKDANFRDSQNNHVPNFQRPLSRKNTAGRMSSSKRRSFDDSQLPLGEMSSCVEGPASLSDALSEGLSSSSDWNARVAAFSYVRSLLQQGPRGFPEIIQSFEKVMKLFFQHLDDPHHKVAQAALSTLADLIPACRKPFESYMERILPHVFSRLIDPKESVRQPCSTTLEIVSKTYGIDSLLPALLRSLDEQRSPKAKLAVIEFAIGSFNKHPSNSEGAGNSGILKLWLAKLTPLVYDKNTKLKEAAISCIISVYTHFDGTGVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNFLQNKKERQRSKYDPYDVTGTSSEEGYVGASKKNHLFGRYSAGSVDSDGARKWNSVPDSTYMTSSVGHSLSDDTQDFYHGIEIGANSDFPVSKAKDSKLLALTASGSDGLWANPQKSNDDSLNVEHTSTTRLEVNGLIDSEHLAAADNESDLGLNHLKLSALKINLTPATEPSIPQILHSICNGNDESPAANKHGALQQLVEAVTKDQSIWSKYFNQILTAALEVLDDSASSIRELALSLIVEMLKNQRDAMEDSVEVVIEKLLNVTKDVSPKVSNEAEHCLTTVLSQYDSFRCLSVVVPLLVTEDEKTLVTCINCLTKLVGRFTQEELMSQLSTFLPALFDAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQLRLVTIYANRISQARTGTPIDANRS
|
External Links
Interpro: IPR001870,IPR043136,IPR013320,IPR003877,IPR044736
Pfam: PF00622
SMART: SM00449
KEGG:
PRINTS: