Effector profile
| PlantPEAD ID: PlantPEAD00923 | Uniprot ID: C5ALD1 | Source: Database |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 337 | Pathogen type: Bacteria |
| Species: Burkholderia glumae | Strain: strain BGR1 | Other name: Pseudomonas glumae |
| Gene name: TssD2 (bglu_2g01440) | NCBI Gene ID: CP001504 | |
| Entry name: C5ALD1_BURGB | Protein name: Type VI secretion system effector, Hcp1 family | |
| DOI: 10.1093/nar/gkab1037 | ||
Gene/Protein information
Gene sequence:
ATGGCACAAGACATCTTTCTCAAACTCAACGGGATCGATGGTGAGTCGGAGGACGCCAGCCACAAGAATGAAATCGACGTTCTTAGCTGGTCGTGGAATGTCTCGCAGCAGTCGAACATGCACGTCGGTTCCGGAGGCGGTGCGGGTCGGGCGACCGTTGACGACCTCACCTTCGAGCACTTCATCGACCGTTCGACGCCGAACCTCACGCAGTACTGCCTGACGGGCAAGCACATCGACGAGGCCAGGCTCGTCGTGCGCAAGGCAGGCGGCAACCCGCTCGAATACCTCAAGCTGACCATGAACGACGTGCTGGTCACTTCGGTGCACCCGTCTGGCGTGAGCGAAAGCGAATCGCGACCGCGTGAAGTGGTGTCGCTTTCGTTCTCGCGCATGAAGCAGGAGTACGTCGTGCAGAATGCGCAAGGCGGCAGCGGCGGGGCGATCACGGCCACCTTCGACATCAAGAAGAACAGCGCCTGA
Protein sequence:
MAQDIFLKLNGIDGESEDASHKNEIDVLSWSWNVSQQSNMHVGSGGGAGRATVDDLTFEHFIDRSTPNLTQYCLTGKHIDEARLVVRKAGGNPLEYLKLTMNDVLVTSVHPSGVSESESRPREVVSLSFSRMKQEYVVQNAQGGSGGAITATFDIKKNSA
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 17384.3 | 160 | 5.48 | -0.409 | 40.28 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Oryza sativa | Disease name: Bacterial panicle blight |
| Host classification: Monocots | NCBI Species: 4530 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036624,IPR008514
Pfam: PF05638
SMART:
KEGG: bgl:bglu_2g01440
PRINTS: