Effector profile
| PlantPEAD ID: PlantPEAD00924 | Uniprot ID: C5AHX3 | Source: Database |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 337 | Pathogen type: Bacteria |
| Species: Burkholderia glumae | Strain: strain BGR1 | Other name: Pseudomonas glumae |
| Gene name: TssD4 (bglu_2g11090) | NCBI Gene ID: CP001504 | |
| Entry name: C5AHX3_BURGB | Protein name: Type VI secretion system effector, Hcp1 family | |
| DOI: 10.1093/nar/gkab1037 | ||
Gene/Protein information
Gene sequence:
ATGGCAATTCCGGCCTATATGTGGCTCAAGGACGATGGCGGTGCCGACATCAAGGGTTCGGTGACGGTTCAGGGCCGAGAAGGCAGCGTCGAGCTCGTCGCGTTCAATCACGGCGTGCACATCCCGACCGACGGCAACACGGGCAAGCTCACCGGTACGCGTGTACACAAGCCGATTACGCTCACGAAGGAAACGGACGCGTCGACGCCATACCTGTACAAGGCCGTGACGAGCGGCCAGACGTTGAAGTCGGTCGAAATCAAGTGGTACAAGATCGACGACGCGGGCAAGGAGAAGGAGTACTTCAACACGAAGCTCGACAACGTCAAGATCGTGGCCGTCAACCCGGTGATGTACGACATCAAGAACCCGGACTACGAGAAACACAACCACCTCGAAAACGTCGAACTGCGCTACGAGACGATCACCTGGTCGTACAAGGACGGCAACATCATCCACAAGGACACCTGGAACGAGCGTTCCTGA
Protein sequence:
MAIPAYMWLKDDGGADIKGSVTVQGREGSVELVAFNHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQTLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMYDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNERS
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 18258.6 | 161 | 6.3 | -0.67 | 17.49 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Oryza sativa | Disease name: Bacterial panicle blight |
| Host classification: Monocots | NCBI Species: 4530 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036624,IPR008514
Pfam: PF05638
SMART:
KEGG: bgl:bglu_2g11090
PRINTS: