Effector profile
| PlantPEAD ID: PlantPEAD00925 | Uniprot ID: C5AMW5 | Source: Database |
| Localization: Apoplastic(Pre) | Pathogen taxonomy ID: 337 | Pathogen type: Bacteria |
| Species: Burkholderia glumae | Strain: strain BGR1 | Other name: Pseudomonas glumae |
| Gene name: TssD5 (bglu_2g07470) | NCBI Gene ID: CP001504 | |
| Entry name: C5AMW5_BURGB | Protein name: Type VI secretion system effector, Hcp1 family | |
| DOI: 10.1093/nar/gkab1037 | ||
Gene/Protein information
Gene sequence:
ATGGATCTGATTCTCTTCCAGCCGGGCGATCAAAGCATCATGAACAGCGACGGCAGCGAGATCGACAACTCGGGCTGGACGGCCGACGGCCCGTCGGGCCTGTGCATCGAAATCGTGTCGCTGCACCAGGGCATGAAGCAGCAGGTCACCACCGACGTCAGCAACAACGCGCGGACCTCGGGCCGGCCCATCATCACCGAGTTCACGCTGGTCAAGTACGTGGACCAGACCTCGGTGAAGCTCTACGAGTACTGCCTCGGCGCCAAGCTGCTGGGCAGCGGCGCGGGCGCGCCGAGCACCATCTACATCGCCCGCGAGTCGGGCGGCAAGACGATGAACATCATCAAGATCCAGCTGAAGGACGCCCTGATCAGCGAGATCCAGCTGCAGACGCACCCGAACGACATGCCCACCGAGCAGTTCAAGCTCAACTTCACCGAAGTCATCTGGACCTACACGCAGCAGCTCAACAACATGACTGCCAAGGGGGTCAAGACGGCCGGCTGGAGTCTCGCCAAGAACATGCCGATCGGCGGCAGCTTCTCGGGGCTCGTCTGA
Protein sequence:
MDLILFQPGDQSIMNSDGSEIDNSGWTADGPSGLCIEIVSLHQGMKQQVTTDVSNNARTSGRPIITEFTLVKYVDQTSVKLYEYCLGAKLLGSGAGAPSTIYIARESGGKTMNIIKIQLKDALISEIQLQTHPNDMPTEQFKLNFTEVIWTYTQQLNNMTAKGVKTAGWSLAKNMPIGGSFSGLV
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 20094.9 | 185 | 5.33 | -0.162 | 33.96 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Oryza sativa | Disease name: Bacterial panicle blight |
| Host classification: Monocots | NCBI Species: 4530 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036624,IPR008514
Pfam: PF05638
SMART:
KEGG: bgl:bglu_2g07470
PRINTS: