Effector profile
| PlantPEAD ID: PlantPEAD00927 | Uniprot ID: Q8XUB9 | Source: Database |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 305 | Pathogen type: Bacteria |
| Species: Ralstonia solanacearum | Strain: GMI1000 | Other name: Ralstonia nicotianae, Pseudomonas solanacearum |
| Gene name: RSc3272 | NCBI Gene ID: AL646052 | |
| Entry name: Q8XUB9_RALN1 | Protein name: Type III effector protein | |
| DOI: 10.1093/nar/gkab1037 | ||
Gene/Protein information
Gene sequence:
ATGAAACGAATCGACGTCCACGCCATCCCGGAGCCCGCCCGGGAGCCGAGCGAGGCTCCCGCGTCCGCCCCGGTCATCGCACAACCGACCGATGCGACCCTGGCCCTGCTGGAAGCCGCCGTGCGCAAGCTGCTGCAGGAACTCAACGGCAACCCCGCGCCGGCGCGGCATGCGAAGAAGCGATGGCGGATCGGCCAGACCGAAGTGGCGGTGCTCGTGTTCGTGACGGAGCGCAAGAATGCGAACGGCCACAGCGAGTGGATCGTGGAGCGCGTGCGGCTGGGCGAGCGCGCGCTCGGCATGGACGTGCTCAGCAACGGCGGCGAGCTCGCCAGCCCGGGCAGCGCCGACATCGGCCCGGTGCAAGGCGATGGGGGCACCACCGGCACCGTGGCTGTCGTCGTGGAGCAGTATGCGTCGCGCACGACCGCGGCGGACGCCGGCACAACGACGCGGCCGGCCTGA
Protein sequence:
MKRIDVHAIPEPAREPSEAPASAPVIAQPTDATLALLEAAVRKLLQELNGNPAPARHAKKRWRIGQTEVAVLVFVTERKNANGHSEWIVERVRLGERALGMDVLSNGGELASPGSADIGPVQGDGGTTGTVAVVVEQYASRTTAADAGTTTRPA
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 16147.2 | 154 | 6.3 | -0.258 | 44.63 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Solanum melongena, Solanum lycopersicum, Solanum tuberosum | Disease name: Bacterial wilt |
| Host classification: Eudicots | NCBI Species: 4111, 4081, 4113 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG: rso:RSc3272
PRINTS: