Effector profile
| PlantPEAD ID: PlantPEAD00932 | Uniprot ID: A0A1I5EJE0 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: 1188_1 | Other name: |
| Gene name: HopBC1 | NCBI Gene ID: RBPG01000063 | |
| Entry name: A0A1I5EJE0_PSESX | Protein name: HopBC1 | |
| DOI: 10.1016/j.chom. 2014.08.004 | ||
Gene/Protein information
Gene sequence:
GTGTTCAGGATCAATACCGGATCGTCGTCATATAACGTTCAAAGTTCCGCATCCTCTGAAGGTTCTGAGGGCGTAAAGTCGTATGGCTTGCATGATAATTTAAATGTAAGGGCCAACACCACAAAGGTCACTGATTATGTGGGTACCAAGGCCGCCAATCAGATTCCTTGCCTTCTAAGCAACGCGACGTTCCAGGGCGACGTTATATCCGTAGCAAACTCAATGGCGGTCCTTGCTGCGATGGGGCAAGGGCACGGTAATGTTATTGTCGCCGACCTGGATAAGGCACACCTTGCCGGCGTGCAATCAGTCCTCGCAATTGCTCAATCATCTGGCAGTCAAGAGGCGTGGTTGAGAGAGGTGAAACGCCAGCATAAGTCCGGCTATGCAGATCATCTTGAACTATTGATACAACGCAATCAGGAGCATCTGTCATTCGACTCGTTAAAGCAGCGCCTGCATCGCGGAGGCGTCAGCCTCGTCCGGGCAGATATGGCCAGTGACAGCGCAACAGAGTTGGCCGGGCTGGCCCCGCATGGCGTATCCGGAATGTACGTGAGTAATATTGAAATGTACCTCGGCGGTTTTCTTGATAAAGCCAACACTTCCATCAACGAGAGGCAGCAGGCACTGAACACGTTCAAGAATAATATCGTCTCGCTTATGGGGGCCGAGGCATTTCTTATTCGTGGCGAATCGGTAGGTATGCAGGTTCACAATAAGAATGCCGCTATCAACGACTGGATACCCCAAGTCCGTTAA
Protein sequence:
MFRINTGSSSYNVQSSASSEGSEGVKSYGLHDNLNVRANTTKVTDYVGTKAANQIPCLLSNATFQGDVISVANSMAVLAAMGQGHGNVIVADLDKAHLAGVQSVLAIAQSSGSQEAWLREVKRQHKSGYADHLELLIQRNQEHLSFDSLKQRLHRGGVSLVRADMASDSATELAGLAPHGVSGMYVSNIEMYLGGFLDKANTSINERQQALNTFKNNIVSLMGAEAFLIRGESVGMQVHNKNAAINDWIPQVR
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 27184.5 | 253 | 6.75 | -0.204 | 35.95 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Arabidopsis thaliana | Disease name: NONE |
| Host classification: Eudicots | NCBI Species: 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: