Effector profile
| PlantPEAD ID: PlantPEAD00939 | Uniprot ID: Q8RP12 | Source: Article |
| Localization: Apoplastic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. maculicola strain ES4326 | Other name: |
| Gene name: HrpWPma | NCBI Gene ID: AF458044 | |
| Entry name: Q8RP12_PSEYM | Protein name: pectate lyase | |
| DOI: 10.1126/science.295.5560.1722 | ||
Gene/Protein information
Gene sequence:
AATGGCATTTTGGTTCCTTGCAGGCGGCGAACAGATCCAGCGAGCGTATTGAAAAATCACCCTGCAACCCCGTCGGAAACGGGAACCCAGAGCCGCGCGATGCCACTCACTTCGAGCAACGGCAAGACAAAGTCCTCATCGACCTATAGAACCCGACAAGGACGCGGCGATCGACGCGGGTAAATCCGGAGTACGACGCTGGTTCATATGTCCATCCCATTGAGGTAAAGCCACCATGAGTATCGGTATCAACTCCACAAGTTACCAACCCGCGTCAACCCAGCTGGACTTTTCAGCGTTGAGCGGCAAAAGCCCTCAGACAGACACACTGGCAGGACAGAACAACCAGGCCGTGGACGCTGAAGCCCTGCTGTTCGGTAGCGACAAGCAACAGGATGTCCGTTTCGGAACACCGGAAAACACTGCCCCGAATCTGCAGAATTCCAGCCAGACCGGCGATAGCCAGTCCAACCTCGTCAAGTTGTTCAGCGCGCTGATCATGTCCTTGATACAAATGCTTGCGAACACCATGAAGAATCAGGACACCGCTCAGGACCCGAACGAGTGGCAGGACCCGTTTCAAAACGAAAACGGCCTTGGCGGAGACACATCGCTGGCTGATGATGGTGGCGGCAGTACGCCTGACGCGACGGGTGATGGTGGTGGCGACACAACCTCTGCAACGGGCGAAGGTGGCGGCGGTGACACAACCTCTGCAACGGGCGATGGTAGCGGCGGCAATACAACCTCTGCAGCAGGTGGCGGCGGTGGCGGGACCCGTTCCGCGACAGACAGCGACAGCGGCGGGACTCCTTCCGTAACGGACAATGGCACTACTCCTACCAATAAAGGCAGTGCACCGACCGGTACGGGCCCGGTGCAAGTTCCTAAAGCCTCCGGCGACACCGTCGTAGTCAATCAAACCATCAAGGTAGGCGCAGGCGAGACCTTCGATGGGCAGGGCAAGACGTTCACTGCCAGCAACGCGCTGGGCGACGGAGGCCAGGGCGAGAGCCAGAAACCTCTGTTCGAGCTGGCTGAAGGCGCCACTTTGAAAAACGTGAACCTGGGTCAGAACGAAGCTGACGGGATCCACGTCAAAGCCGCCACAGACGCTAAAGTCACTATTGATAACCTGCACGCCGAAAACGTTGGTGAGGACCTGATCACCGTCAAAGGCGAGGGAGGCGCAAAGGTAACTAATCTGGACATTAAGAACAGCAGTGCCCAAGGTGCAGATGACAAGATCATCCAGCTAAACGCTGACACCCACTTGAACGTCGACGGTTTCAAGGCTACCGACTTCGGTACGATGGTTTGCACCAATGGCGGCAAGCAGTTTAATGACATGAGCATTGAGCTGAATGGCATAGATGCCAGCCACGGCAAGTTTGCCTTGGTGAAAAGCGACAGTGAAGATCTGAAGCTGGCAACGGGCGACATCGCCATGACCGACGTTAAACATGCCTACGATAAAACCAAGTTGTCCACCCAGCACACCGAACTTTGATCCGAGGTAAATACGGGTAAAAGAAAGGGGGCGTAGTCTTTGGAGTACGCTCCTTTTTTTGTTACAGGCAATCCGCCGAAATGCCTATGGCCGCATTGCC
Protein sequence:
MSIGINSTSYQPASTQLDFSALSGKSPQTDTLAGQNNQAVDAEALLFGSDKQQDVRFGTPENTAPNLQNSSQTGDSQSNLVKLFSALIMSLIQMLANTMKNQDTAQDPNEWQDPFQNENGLGGDTSLADDGGGSTPDATGDGGGDTTSATGEGGGGDTTSATGDGSGGNTTSAAGGGGGGTRSATDSDSGGTPSVTDNGTTPTNKGSAPTGTGPVQVPKASGDTVVVNQTIKVGAGETFDGQGKTFTASNALGDGGQGESQKPLFELAEGATLKNVNLGQNEADGIHVKAATDAKVTIDNLHAENVGEDLITVKGEGGAKVTNLDIKNSSAQGADDKIIQLNADTHLNVDGFKATDFGTMVCTNGGKQFNDMSIELNGIDASHGKFALVKSDSEDLKLATGDIAMTDVKHAYDKTKLSTQHTEL
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 42975.3 | 424 | 4.29 | -0.567 | 19.87 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR004898,IPR012334,IPR011050
Pfam: PF03211
SMART:
KEGG:
PRINTS: