Effector profile
| PlantPEAD ID: PlantPEAD01012 | Uniprot ID: Q9L6W4 | Source: Article |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: HOPB1 | NCBI Gene ID: AF232004 | |
| Entry name: Q9L6W4_PSEUB | Protein name: Uncharacterized protein | |
| DOI: 10.1126/science.1203659 | ||
Gene/Protein information
Gene sequence:
ATGGGATTTTTACGTCCGGCCTATCCGCTGATGGCGATGCTGCGGATTCACCTGATGCAGAACTGGTTTGATTACAGCGATCCGGCGATGGAGGAAGCACTTTACGAGACAACGATCCTGCGCCAGTTCGCAGGGTTGAGTCTGGATCGAATCGCCGATGAAACCACGATTCTCAATTTCCGGCGCCTGCTGGAAAAGCATGAGTTGGCAGGCGGGATTTTGCAGGTCATCAATGGCTATCTGGGTGATCGAGGTTTGATGCTGCGCCAAGGTATGGTGGTCGATGCGACGATCATTCATGCGCCGAGCTCGACCAAGAACAAGGACGGCAAACGCGATCCCGAAATGCATCAGACGAAGAAAGGAAACCAGTATTTCTTCGGCATGAAAGCGCATATCGGCGTCGATGCCGAGTCGGGTTTAGTCCATAGCCTGGTGGGTACTGCGGCGAATGTGGCGGACGTGACTCAGGTCGATCAACTGCTGCACAGTGAGGAAACCTATGTCAGCGGTGATGCGGGCTACACCGGCGTGGACAAGCGTGCGGAGCATCAGGATCGCCAGATGATCTGGTCAATTGCGGCACGCCCAAGCCGTTATAAAAAGCATGGCGAGAAAAGTTTGATCGCACGGGTCTATCGCAAAATCGAGTTCACGAAAGCCCAGTTGCGGGCGAAGGTTGAACATCCGCTTCGCGTGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGGTTTCGCGGGCTGGCTAAAAACACCGCGCAACAGGCTACTCTGTTTGCCTTGTCGAACCTTTGGATGGTGCGAAAACGGCTGCTGGCGATGGGAGAGGTGCGCCTGTAA
Protein sequence:
MRPVGGPAPGYYPPTYEAERPTAQAAGNDRARSSQASSSPAASVAPETPMLGDLKRFPAGRYPDMKVENIRLKIEGQEPGGKDGVKHTRRRKPDAAGSSHVHGGQSVASTSASAQSKALQDTNFKASDLAELARWCESPHPYALAPSKAAGKSSQLSANVVSILLQEGKHALEQRLEAQGLKLADVVVSEGRDHLHINLNYLEMDSCLGTSKGLWAPDSNDKKLIAKAARYFDDFNAQKLPELAPLTKMKSKDSLGVMRELLRDAPGLVIGEGHNSTSSKRELINNMKSLKASGVTTLFMEHLCAESHDKALNNYLSAPKGSPMPARLKNYLDLQSQGHQAPEELHTKYNFTTLVEAAKHAGLRVVSLDTTSTYMAPEKAEIKRAQAMNYYAAEKIRLSKPEGKWVAFVGATHATSCDGVPGLAELHGVRSLVIDDLGLKSRATVDINVKNYGGKLNPDVRLSYKV
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 50355.1 | 466 | 9.16 | -0.506 | 46.76 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
Q9FL28
|
LRR receptor-like serine/threonine-protein kinase FLS2
|
FLS2
|
Arabidopsis thaliana (related: thale cress)
|
MKLLSKTFLILTLTFFFFGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTIKQKSSHFSKRTRVILIILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSALKLKRFEPKELEQATDSFNSANIIGSSSLSTVYKGQLEDGTVIAVKVLNLKEFSAESDKWFYTEAKTLSQLKHRNLVKILGFAWESGKTKALVLPFMENGNLEDTIHGSAAPIGSLLEKIDLCVHIASGIDYLHSGYGFPIVHCDLKPANILLDSDRVAHVSDFGTARILGFREDGSTTASTSAFEGTIGYLAPEFAYMRKVTTKADVFSFGIIMMELMTKQRPTSLNDEDSQDMTLRQLVEKSIGNGRKGMVRVLDMELGDSIVSLKQEEAIEDFLKLCLFCTSSRPEDRPDMNEILTHLMKLRGKANSFREDRNEDREV
|
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: