Effector profile
| PlantPEAD ID: PlantPEAD01021 | Uniprot ID: A0A3M6BH52 | Source: Article |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. phaseolicola strain K4 | Other name: Pseudomonas savastanoi pv. phaseolicola |
| Gene name: HOPM1 | NCBI Gene ID: RBRG01000085 | |
| Entry name: A0A3M6BH52_PSESH | Protein name: Type III effector HopM1 | |
| DOI: 10.1126/science.1203659 | ||
Gene/Protein information
Gene sequence:
ATGAACACTCCGCGAATCGGTGGATCGGGCGCCATCGAGCTCTCCCGGATAAACCAGCAGCCCGATGCTATTCCCGCCCAGACCGCTCACCCGAATGCAGTGACGCCAGGCATGAATCCGCCGCTGACTCCCAATCAGGCAGGGCCGCACGCAGCAGAAAGCTCGGCTACCGGTGCCGCGCGGCTGAATGTTGCGGCGCGACACACGCAGCTTTTGCAGGCCTTCAAGGCTGAGCAGGCGACAGCTCCGGTCAGCGGCGCGCCGATGATCAGCTCGCGTGCCGCGTTATTGATTGGCAGCTTGCTGCAGGCTGAAAAGCTGCCTTTTGAAGTCATGGCCGAGCGTCTCTCCCCTGAGCGCTATCAACTGAAGCAGTTTCATGGTTCGGACTTGCAACAACTGCTGGACAAGTTTACCCAGCCGGGTCAGGTACCCGACAAAGCCGAAGTCGGTCAACTGATCAAGGGCTTCGCGCAATCGGTCGCCGATCAACTGGAGCACTTTCAGTTGATGCATGACGCTACGCCCACCAAGACAGGCCCGCATGCCAACGAGGATCGGGCGACGCTTGCCGTCAGTCAGACAGCCCTTGGCGAGTACGCCGGTCGTGCGAGCAAGGCAATCGGCGAAGGGCTGAGCAAAGGCATCGTGTCGCTGGATGATCACATCGCTGCACTGGATGTGAGCCTGCAAAGTGCCGAAGAGGGCGCCAAGGACGCTTTGCACTCTAACAGACAGGCGCTGGTTGATGCGAAAACCACTCTGGTCGGCCTGCACGCCGATTTCGTCAAATCGCCAGAGGCTAAACGCCTTGCTTCGGTCGCCGCACATACACAACTGGACACCGTCGTCAGTGATCTTGTCACTGCCCGCAACTCGGTTGGCGGCTGGAAAGGTGCCGGGCCGATTGTCGCAGCTGCGGTTCCACAGTTCCTGTCGTCAATGACGCACCTGGGTTATGTGCGTTTGTCCACCAGTGACAAGCTGCGAGAGGAGGTGCCTGAGACCAGCAGCGACGCCAGTATGCTCAAGGCGGCGATAACCGGAATGGTCACGGGCATTGCCCACGAGACAGTCAACAGCGTAGTGAAACCGGTGTTTCAGGCTACTTTTCAGAAAACTGGCCTGAACGAACGGCTGAACATGGTGCCACTCAAGGCTATCGATACCAATTCGGTGATTCCTGACCCCTTCGAACTGAAAAGCGAGCACGGTGAGCTGATCAGAAAAACGCCCGAGGAAATCGCTCAGGACAAGGCATTCGTCAAGGGCGAACGCGCGGTGCTGAATCAGAAGAAGGTCCAGGGTTCGTCCACCCACCCGTTGGGTGAAATGATAGGTTACAGTGCCTTTGGTGGTTCACATGCCGTGCGCCAGATGCTCAACGATTTACACCAGATCAATGGTCAGACGCTGAGTGCAAGAGCCTTGGCATCCGGCTTTGGCGGGGCGGTGTCTGTCAGTTCGCAAACGCTTTTGCAGTTGAAGTCGACGTATGTCGATCCCGCAGGGCGCAAAATTCCGGTATTCACGCCAGACCGAGCCGAGACAGAGCTGAAAAAGGATCTGGCCAAAGGTATGGACCTGCGCGAAGCCTCGGTACGTACCACGTTCTACAGCAAGGCAATATCCGGGTATTCAGAGCTCGGCGCTGACCTCGGCACTGCCGCCTGTGACAGCCCAGCTGGAAGGCGCGCGCGGTACGCTCAGTGCGGGGAATATCCTGCGCAATATGGCTCTGGTCGCAACGGGCTCGATTTCCTATCTGTCCACGCTTTACGCCAACCAGTCTGTCACCGCCGAAGCCAAGGCGTTGAAGGATGCGGGGATGGGGGGCGCAACGCCGATGCTGGATCGTACCGAAACAGCCTTGAACAACATCCGCCATCCGAACAGGGCATCGCTGCCACATACCTTCCAGCCGAGCACGTTGAGCGGTATTCCAAGGGCTATGGAAAGCGCTTATCACATGGGACGAGGCGCGTTGCAGCTGCCAACCCAGATGGCCGTGGACACGGTTCGAGTGTTGGCAGACGGTGCGCTGAACGGCGTGTCGTCAGCACGCGCTGCGCTTACGCCAGCAAAACCGCCTGA
Protein sequence:
MNTPRIGGSGAIELSRINQQPDAIPAQTAHPNAVTPGMNPPLTPNQAGPHAAESSATGAARLNVAARHTQLLQAFKAEQATAPVSGAPMISSRAALLIGSLLQAEKLPFEVMAERLSPERYQLKQFHGSDLQQLLDKFTQPGQVPDKAEVGQLIKGFAQSVADQLEHFQLMHDATPTKTGPHANEDRATLAVSQTALGEYAGRASKAIGEGLSKGIVSLDDHIAALDVSLQSAEEGAKDALHSNRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDTVVSDLVTARNSVGGWKGAGPIVAAAVPQFLSSMTHLGYVRLSTSDKLREEVPETSSDASMLKAAITGMVTGIAHETVNSVVKPVFQATFQKTGLNERLNMVPLKAIDTNSVIPDPFELKSEHGELIRKTPEEIAQDKAFVKGERAVLNQKKVQGSSTHPLGEMIGYSAFGGSHAVRQMLNDLHQINGQTLSARALASGFGGAVSVSSQTLLQLKSTYVDPAGRKIPVFTPDRAETELKKDLAKGMDLREASVRTTFYSKAISGYSELGADLGTAACDSPAGRRARYAQCGEYPAQYGSGRNGLDFLSVHALRQPVCHRRSQGVEGCGDGGRNADAGSYRNSLEQHPPSEQGIAATYLPAEHVERYSKGYGKRLSHGTRRVAAANPDGRGHGSSVGRRCAERRVVSTRCAYASKTA
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 73992.3 | 697 | 8.88 | -0.362 | 32.73 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: Phaseolus vulgaris | Disease name: Halo blight of bean |
| Host classification: Eudicots | NCBI Species: 3885 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
Q9SF25
|
At3g11720
|
F26K24.1
|
Arabidopsis thaliana (related: thale cress)
|
MEKKRDVSEYRERLNETLSSPELINEQTLKTLVRKQLNEECSVDILDQRVAALSSTIEKLRSVSTKDQDLSKSSTEASYGDWKVKHDDKDCRVMYREGLKGSPFHTLLVEGCTDGTIEDCLCVCWESSFYEKWWPKLTFPSFRVLEAKCLQKFRIDEQICLLRVKAPWPLTDREAVLQFFVFEYFKDDLVIILLNSIEVESGSVAEVNAVRIDFVGGVAIQKVTPEKSYIRFIAEVDIKLDLVPPSLINFMSRQLLGNGFKLFKKTIGSVAESDDYKTVLADPLYTHIREALYSSDKTDEICQVNELHSQQGRDCEEKEPKLEADDDMEKENETRDCENESVPCKRDVPEIEEEECVDDLKEENKSSPSSSSSSSSSSEDEDKNGKTRFCISPEVKQALGTLERVISMVRKSKTDNNNTSTSSEEEEEEASSSPMQHSGSTQIVSSSKVCIQDPNTELLDEASFAHYHNSNKIAPASPEIDLTTNSEVTRITVSQATNLFCQTTENSDDNYKPSGLNGGKSSNLQRKRKPSCFGFRFWRRRT
|
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: