Effector profile
| PlantPEAD ID: PlantPEAD01023 | Uniprot ID: Q88BP7 | Source: Article |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain ATCC BAA-871 / DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: HOPT1-1 | NCBI Gene ID: AE016855 | |
| Entry name: Q88BP7_PSESM | Protein name: Type III effector HopT1-1 | |
| DOI: 10.1126/science.1203659 | ||
Gene/Protein information
Gene sequence:
ATGAAAACAGTCAGCAATCACTCGATACCCAGTACAAATCTCGTCGTGGATGCGGGAACGGAAACTTCGGCGCAGAAATCCCAGCCGGTTTGCAGCGAAATCCAGCGTAACAGCAAGATCGAAAAAGCAGTCATCGAACACATTGCCGACCACCCGGCAGCGAAAATGACAATAAGCGCGCTGGTTGACACGTTGACAGACGTTTTTGTCAGGGCTCATGGGGAGGTTAAGGGGTGGGCCGAAATCGTCCAGGCAGTCTCTCGCCCTCATGACAGTAATCGACACGGCAGTGGAGTGCTCAGCCCGCGCTTTGATGTAATGGGGAGTGTTGGTTGGAATGCGGCAGCTATCCGGGCCACCAGTCGCGTCGGGACGCTTCGAGAGAAAGGTACACTGTTCACTAACCTTATGCTCAGTAACAACTTTAAACATTTGCTTAAACGAGTGGTTAACGATCCAGCCTTGCAGCAAAAGCTCGACGGTGGGTTAGACCTCAACTATCTGAAGGCTTGTGAAGGCGATCTTTATGTCATGTCAGGGTGGGCTGCACGGGCTAGCGAAAGTCGTGAACAAATTGGCAAAGCCCGGTATGAAACGGCATCAAATCTTAGCCAGACGCTGATCAGTGCACGTGAGTTGGCTTTTCATCGTCACAATCCGGTTAATCATCCGTCTGCCCAAACGAAAGTGGGCTTCGATAAGGGTTTGCCTGAGGAATCTGATCTGCAGGTTCTGAGAGGCCATGGCAGCAGTGTATGGAGTGTAAAACCGGGCAGCGATTTCGCAAAGCGTGCTGAAGTTTCTGGAAAGCCTATTATCGCCGGCCCGTCCGGTACCGCTTCGCGCATGGTCGCTGTTGCGCGTTTTCTGGCACCGGCTTGTTTGAAAAGCCTGGGTATTGAGAGTGAGCAGAACCTGAAAGAGCTTGTGCGGTATGCCTGCTATGCCTATTTCGGTCAGGACAGCCACCATTCGATGCTTGAAGTGAATCTTGGTGTCGCTTCCCATGGAATGCCGGAACAATGGGACGACACGCTTTATAACGAGCCTTTCAGTAATTCAATTAAAGGTCGCGGGTTTGGTATAGACAATCTCGCGCATAGGCAAGTCGTCAGGCAGGCGGCTCAAAAGTCATGA
Protein sequence:
MKTVSNHSIPSTNLVVDAGTETSAQKSQPVCSEIQRNSKIEKAVIEHIADHPAAKMTISALVDTLTDVFVRAHGEVKGWAEIVQAVSRPHDSNRHGSGVLSPRFDVMGSVGWNAAAIRATSRVGTLREKGTLFTNLMLSNNFKHLLKRVVNDPALQQKLDGGLDLNYLKACEGDLYVMSGWAARASESREQIGKARYETASNLSQTLISARELAFHRHNPVNHPSAQTKVGFDKGLPEESDLQVLRGHGSSVWSVKPGSDFAKRAEVSGKPIIAGPSGTASRMVAVARFLAPACLKSLGIESEQNLKELVRYACYAYFGQDSHHSMLEVNLGVASHGMPEQWDDTLYNEPFSNSIKGRGFGIDNLAHRQVVRQAAQKS
Loading ...
Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 41146.5 | 378 | 8.93 | -0.349 | 40.06 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG: pst:PSPTO_A0019
PRINTS: