Effector profile
| PlantPEAD ID: PlantPEAD01024 | Uniprot ID: Q87W46 | Source: Article |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain ATCC BAA-871 / DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: HopV1_Pto DC3000 | NCBI Gene ID: AE016853 | |
| Entry name: Q87W46_PSESM | Protein name: Type III effector HopV1 | |
| DOI: 10.1126/science.1203659 | ||
Gene/Protein information
Gene sequence:
ATGCGGTTTGATGCTGCCCGAGGCCAGAAGCCCAAAGCCCCTATGGATGCACCGTCATCATTACGTTTGCGAGCGATAGCAGGTGGCATGCCCAGTGAAGAAGCAGGAACGACTGCACCTGCTGACGTGAATCAGCCTCCACCTGCTGATGTTCGTCCAGAAATGGGTGTAGGTCCTGTGAGACTCTTCGTTAAACTGATGGTAGGAACTCTGGCGCTGTCGACAGGAGTCCGTTTTGCAAGATACCCAGGTGATTTCGCGAAGGATCCGGGAGGCAGTGTATGGGCAGCAATCAATCTGCAGCATCGCTCGAGCGTCACACATCTTGAACAAGGCAATAAGACGGTTCTTGAGCGTTTCGGTGCACATATTCCAAAAGACAGTGCGTGTTTCAAAGCTCGCGCTGACGTCACACACGATGTTCCCTCAGGCGTGGCAGGGCAGTGGAACCACAAAACCCAACGGGTAAAACTGAACCCTAACATTCATTTCGAGAGCCATCCGGCACAGGTCGCCGGACATGAGTTCATACACTGTTACACGCATCCTGAGTTTGTCGAACGCCATATAAAACATCCGCACTGGAAAGCCCTGAACGAAGGGTTGACGACTCGTTTGACAGAGAAACTGCCAGACCCTAAGCGTCTCTTGCCCATTCCCTTGGCAAAGGATCCCTATCATGGTTTCAAGCTGTCCACCGGGGACTCCTGGCCGGATGCGGCCAGGCGAATCGAAGACGAAGTTGGCGAAGATGTGTTGTTGAAAGCGTTCTTTGGCGGCGATGACCAGGCTATTAGTGAAGTAGCTAAAGCCGCTGCTCAGATCTACCCCAAGATTGCCTCACGTATTACCGAGAGGGAGTTGTATCAAGCGGGCAGCATGCGTGGAGGACAACAGCTGGCCGAGTGTTACGTAGGTGCTTTGCTCAAAAACGGTCAGAAACTGCCTGACAGTTTTACGAATTATCTGCTACCTGTATTTAGCTATTCAGATATAAGCCCTGGTCACGCGAAAAAAATACAGGCGCAAGCGGAAAAAAGTCAAAAGCGGATGGGAATTGTGTTCGATACAGCGTTTTTTTCACCTGACCTGAAGACCCAGAGACTGGCACTTGGCATGCTACGGGAGGACCTGCTGATGCACTGGAAAAAAGTTATTCCGGATAGAAAGTAA
Protein sequence:
MRFDAARGQKPKAPMDAPSSLRLRAIAGGMPSEEAGTTAPADVNQPPPADVRPEMGVGPVRLFVKLMVGTLALSTGVRFARYPGDFAKDPGGSVWAAINLQHRSSVTHLEQGNKTVLERFGAHIPKDSACFKARADVTHDVPSGVAGQWNHKTQRVKLNPNIHFESHPAQVAGHEFIHCYTHPEFVERHIKHPHWKALNEGLTTRLTEKLPDPKRLLPIPLAKDPYHGFKLSTGDSWPDAARRIEDEVGEDVLLKAFFGGDDQAISEVAKAAAQIYPKIASRITERELYQAGSMRGGQQLAECYVGALLKNGQKLPDSFTNYLLPVFSYSDISPGHAKKIQAQAEKSQKRMGIVFDTAFFSPDLKTQRLALGMLREDLLMHWKKVIPDRK
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 43124.4 | 390 | 9.3 | -0.445 | 39.33 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG: pst:PSPTO_4720
PRINTS: