Effector profile
| PlantPEAD ID: PlantPEAD01080 | Uniprot ID: A0A2J8F2T3 | Source: Article |
| Localization: Apoplastic(Exp) | Pathogen taxonomy ID: 27337 | Pathogen type: Fungi |
| Species: Verticillium dahliae | Strain: 12008 | Other name: Verticillium wilt |
| Gene name: VdCP1 | NCBI Gene ID: MPSH01000038 | |
| Entry name: A0A2J8F2T3_VERDA | Protein name: SnodProt1 | |
| DOI: 10.3389/fpls.2017.01880 | ||
Gene/Protein information
Gene sequence:
ATGCAGCTGTCCAACCTCCTCGCCATCTTCACCGTTGCCACTGCCGCCTCGGCCGCCTCTGTCTCCTACGACAAGGGCTACGACGACGGCTCACGCTCTCTGACTGCCGTCAGCTGCTCCGACGGCGCCAACGGCCTCATCACCCGCTACGGCTGGCAGACCCAAAAGCAGGTCAAGAAGTTCCCCTACATCGGTGGCGCGCCCGCCGTCGCTGGTTGGAACTCGCCCAACTGCGGCACCTGCTGGGAGCTCAGCTACAACGGACGCACCATCAATGTCCTCGCCATCGACCACTCGGCCAATGGCTTCAACATTGCCCTCGACGCCATGAACGCCCTCACCGGTGGACAGGCTGTCAAGCTCGGCCGTGTCGATGCCAGCTCCAAGCAGGTCAACAAGAGCAAGTGCGGCCTCTGA
Protein sequence:
MQLSNLLAIFTVATAASAASVSYDKGYDDGSRSLTAVSCSDGANGLITRYGWQTQKQVKKFPYIGGAPAVAGWNSPNCGTCWELSYNGRTINVLAIDHSANGFNIALDAMNALTGGQAVKLGRVDASSKQVNKSKCGL
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 14411.2 | 138 | 8.96 | -0.087 | 30.34 |
Plant infestation information
| Experimental plant: Solanum lycopersicum (related: tomato) | |
| Susceptible plant: Gossypium hirsutum, Lactuca sativa, Solanum lycopersicum | Disease name: Vascular wilt |
| Host classification: Eudicots | NCBI Species: 3635, 4236, 4081 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR010829,IPR036908
Pfam: PF07249
SMART:
KEGG:
PRINTS: