Effector profile
| PlantPEAD ID: PlantPEAD01104 | Uniprot ID: Q01920 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 4787 | Pathogen type: Oomycota |
| Species: Phytophthora infestans | Strain: NL-88069 | Other name: Potato late blight agent, Botrytis infestan |
| Gene name: PexRD6 | NCBI Gene ID: L23938 | |
| Entry name: Q01920_PHYIN | Protein name: Effector protein IpiO | |
| DOI: 10.1093/plcell/koab069 | ||
Gene/Protein information
Gene sequence:
ATGCGGTCGCTCCTGTTGACCGTGCTTTTGAACCTGGTCGTGCTTCTAGCAACCACTGGGGCAGTTTCATCCAATCTAAACACCGCCGTGAATTACGCTTCCACATCCAAGATTCGCTTTCTGTCGACTGAGTACAACGCCGATGAAAAAAGAAGCTTGCGAGGTGACTACAACAATGAGGTCACAAAAGAGCCCAACACGTCTGACGAAGAGCGGGCGTTTTCTATCTCAAAGTCTGCGGAATACGTGAAGATGGTACTTTATGGATTCAAACTTGGATTTTCTCCTCGCACTCAGTCCAAGACGGTGTTGCGATACGAAGATAAACTGTTTACGGCCCTCTATAAATTAGGAGAGACGCCGATAAGCCTAAGGACCAAGCATCTCGATAAGGCTTCCGGTAGCGTATTTTTCAACAGATTCAAAAACTGGTACGATAAAAACGTTGGCCCTAGCTAG
Protein sequence:
MRSLLLTVLLNLVVLLATTGAVSSNLNTAVNYASTSKIRFLSTEYNADEKRSLRGDYNNEVTKEPNTSDEERAFSISKSAEYVKMVLYGFKLGFSPRTQSKTVLRYEDKLFTALYKLGETPISLRTKHLDKASGSVFFNRFKNWYDKNVGPS
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 17196.6 | 152 | 9.6 | -0.38 | 26.42 |
Plant infestation information
| Experimental plant: Nicotiana benthamiana (no common name found) | |
| Susceptible plant: Solanum lycopersicum, Solanum tuberosum | Disease name: Late blight |
| Host classification: Eudicots | NCBI Species: 4081, 4113 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: