Effector profile
| PlantPEAD ID: PlantPEAD01163 | Uniprot ID: NONE | Source: Article |
| Localization: Unknown | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: HOPT1-2 | NCBI Gene ID: NONE | |
| Entry name: | Protein name: | |
| DOI: 10.1126/science.1203659 | ||
Gene/Protein information
Gene sequence:
ATGATCAAAACAGTCAGCGATAACTCGATACCTGGTACGTATGGCATCGCGTTTACGAGGGTGGATACTGCGGCGCAGATATCCAGGCCGGTTCCCAGTGATATCCAGCGCAACAGCAGTATCGAAAAGGCAGTCATCGAACACATTGCTGACCACCCGGCGGCGAAGGTGGTAATGAGTGCGTTGGTAGAGGCATTGACAGGTGTTTTCGTAAAGGCTCAAGGTGAAATCAAGGGCTGGGCGGAAATCGTCCAGGCTGCTTCGCGTCCCCATGACAGCAACCGTAAGGGCACTGGTGTGCTGAGTCCGCGTTTCGATGTAATGGGCTGTGTGGGTTGGAATGCTGCAACGATTCGGGCTACCTGCCGGGTTGGCACACTGCGTGAAAAAGGCACGTTGTTCACTAACCTTATGTTGAGTGACAACTTCAAGCGGATACTCGAGCGTTCGATGACCGATCCTGCCTTGCAACGCAAGCTGGAAGGCTTGGTGGATCTGGACTATCTGAAGACCACGGATGGAAATCTGTACGCAATGTCCGGCTGGGCAGCCCGCGCCAGTGAATCTCGTGAACAGATTGGCAAGGCGGCATTTGAGTCTGCTTCAAACCTCGGCTCGGCACAGATCAGCGCACGGGAGTTGGCTTTTCATCGCCATAATCCGGTTAATCATCCGTCGAATCAGGCAAGAGTGGGTTTCGGCATATCGTCCCCAGCGAATAATGATCTGCAAGTTCTAAGAGGTCATGGCAGCAGCGTATGGAAGGTGAAGCCAGGCAGCGATTTTGCCCGGCTGGCCAGTGCATCGGGTAAGCCAGTGATCGCAGGTCCATCCGGTACCGCGTCGCGCTTCATGGCGGTAGCACGCTTTATTTCACCCGGCTGCCTGCGTGACTTGGGGCTTGATAGTGAGCAAGCATTCAAAGAGCTGGTCCGCTATGCGTGCTACGGTTATTTCGGTCAGGACGACCACCACTCGATGCTGGAGGTCAATCTGGGTATTGCTCCCCACGGTCTGGATGAGCAGTGGGACGATAAGCTATACACCGAGCCTTTCAGTCACGTCATCATGGGGCGCGGCTTCAGTGTTGACAATGCAGCTCAGCAGCACATCGTAGCGCGTGCGACCGACGAGCCAGTCGAGCATTCAGCCGCTGATCGGGTAGGCTGA
Protein sequence:
MIKTVSDNSIPGTYGIAFTRVDTAAQISRPVPSDIQRNSSIEKAVIEHIADHPAAKVVMSALVEALTGVFVKAQGEIKGWAEIVQAASRPHDSNRKGTGVLSPRFDVMGCVGWNAATIRATCRVGTLREKGTLFTNLMLSDNFKRILERSMTDPALQRKLEGLVDLDYLKTTDGNLYAMSGWAARASESREQIGKAAFESASNLGSAQISARELAFHRHNPVNHPSNQARVGFGISSPANNDLQVLRGHGSSVWKVKPGSDFARLASASGKPVIAGPSGTASRFMAVARFISPGCLRDLGLDSEQAFKELVRYACYGYFGQDDHHSMLEVNLGIAPHGLDEQWDDKLYTEPFSHVIMGRGFSVDNAAQQHIVARATDEPVEHSAADRVG
Loading ...
Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 42084.5 | 389 | 7.23 | -0.254 | 35.21 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: