Effector profile
PlantPEAD ID: PlantPEAD01164 | Uniprot ID: NONE | Source: Article |
Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
Species: Pseudomonas syringae | Strain: Pmo M301020 | Other name: |
Gene name: HOPBB1 | NCBI Gene ID: NONE | |
Entry name: | Protein name: | |
DOI: 10.1126/science.1203659 |
Gene/Protein information
Gene sequence:
GTGTTGTTTGTGGGTAATATTTGTGGTACTTCCGGCTCCCATTATGTATATAGTCCGCCAGTAAGCCCTCGACATGTATCGGGTTCGTCCACACCGGTGCACAGTGTAGGCGGTCAAGGCCTAACCTCGGTGTATCAACTTTCCGCTGAGGCACGAGATGATTTTCTTGATCGCTTTGACCCAATGCGAAACCTGGGTCTGAACTCGGAAACGCCGCTTTACAGGACCACGGATACCAGCTGGCGCAATGTTATTGCGCAAGTAAGAAATCCTGACGAAGATCCGCGCATCGACTATCTGCTGACAATGGCAGAAGAAATTTACAAGGCATCAAGCACTTTTAGAAAAAGAATGAACGCAGTTGCGGGCGAAGGTGGTGTCACGATAAGGATCGTGCCAGACAGTGAGATCGGCCATTCCTTTGGGCATGCCGCAACAAGACCGGCAACTCGGTCTATTGCCTTGACAGAGACAACAGCAAGCAACGTTCAAGGAAGCCACTATCAATCTCTCAATATATTATTGGTTGAACTCTCAAACCTGAGCCGGGCCAATGAAATTACGGAGAACCGTTCCAGTTTCCAGCAGGGACGAATAGGTCAGCGGCGCGCGGCTCATAACGCCGAAAGAGCAGAGTATGGAACGATCGAAGACATGGTCAAATATTTTACGGAGGCTCGACCTGTCATAGAATCACTAGGCTACGGGAATCCGTCGATGTGGTACGCCGCACACGACTACGGCGGCGGAATCGTGCCAGCATACCGATCATTCGAAGATTACTACGCAACAGCGCTTTCAAGCGGCCATACTGACGTTCACCTTAACAACTATTCTCGGTCTGATGAATAG
Protein sequence:
VLFVGNICGTSGSHYVYSPPVSPRHVSGSSTPVHSVGGQGLTSVYQLSAEARDDFLDRFDPMRNLGLNSETPLYRTTDTSWRNVIAQVRNPDEDPRIDYLLTMAEEIYKASSTFRKRMNAVAGEGGVTIRIVPDSEIGHSFGHAATRPATRSIALTETTASNVQGSHYQSLNILLVELSNLSRANEITENRSSFQQGRIGQRRAAHNAERAEYGTIEDMVKYFTEARPVIESLGYGNPSMWYAAHDYGGGIVPAYRSFEDYYATALSSGHTDVHLNNYSRSDE
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Main properties of effector
Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
---|---|---|---|---|
31237.4 | 283 | 5.8 | -0.493 | 53.95 |
Plant infestation information
Experimental plant: Arabidopsis thaliana (related: thale cress) | |
Susceptible plant: Arabidopsis thaliana | Disease name: NONE |
Host classification: Eudicots | NCBI Species: 3702 |
Pathogen-plant protein interaction
Uniprot ID | Protein name | Gene name | Species | Protein sequence |
---|---|---|---|---|
Q9LVI4
|
Protein TIFY 6B
|
TIFY6B
|
Arabidopsis thaliana (related: thale cress)
|
MERDFLGLGSKNSPITVKEETSESSRDSAPNRGMNWSFSNKVSASSSQFLSFRPTQEDRHRKSGNYHLPHSGSFMPSSVADVYDSTRKAPYSSVQGVRMFPNSNQHEETNAVSMSMPGFQSHHYAPGGRSFMNNNNNSQPLVGVPIMAPPISILPPPGSIVGTTDIRSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQVFSPPQTHQQVVHHTRASVDSSAMPPSFMPTISYLSPEAGSSTNGLGATKATRGLTSTYHNNQANGSNINCPVPVSCSTNVMAPTVALPLARKASLARFLEKRKERVTSVSPYCLDKKSSTDCRRSMSECISSSLSSAT
|
Q93Z00
|
Transcription factor TCP14
|
TCP14
|
Arabidopsis thaliana (related: thale cress)
|
MQKPTSSILNVIMDGGDSVGGGGGDDHHRHLHHHHRPTFPFQLLGKHDPDDNHQQQPSPSSSSSLFSLHQHQQLSQSQPQSQSQKSQPQTTQKELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSLPSHFRSAASTFSPNNIFSPAMLQQQQQQQRGGGVGFHHPHLQGRAPTSSLFPGIDNFTPTTSFLNFHNPTKQEGDQDSEELNSEKKRRIQTTSDLHQQQQQHQHDQIGGYTLQSSNSGSTATAAAAQQIPGNFWMVAAAAAAGGGGGNNNQTGGLMTASIGTGGGGGEPVWTFPSINTAAAALYRSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINEDSNNNEGGRSDGGGDHHNTQRHHHHQQQHHHNILSGLNQYGRQVSGDSQASGSLGGGDEEDQQD
|
Q9C9L2
|
Transcription factor TCP15
|
TCP15
|
Arabidopsis thaliana (related: thale cress)
|
MDPDPDHNHRPNFPLQLLDSSTSSSSTSLAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSRSSLSAAHLRTTPSSYYFHSPHQSMTHHLQHQHQVRPKNESHSSSSSSSQLLDHNQMGNYLVQSTAGSLPTSQSPATAPFWSSGDNTQNLWAFNINPHHSGVVAGDVYNPNSGGSGGGSGVHLMNFAAPIALFSGQPLASGYGGGGGGGGEHSHYGVLAALNAAYRPVAETGNHNNNQQNRDGDHHHNHQEDGSTSHHS
|
Q9S7W5
|
Transcription factor TCP13
|
TCP13
|
Arabidopsis thaliana (related: thale cress)
|
MNIVSWKDANDEVAGGATTRREREVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSIFNHHQSFLNLGQRPGQDPTQLGFKINGCVQKSTTTSREENDREKGENDVVYTNNHHVGSYGTYHNLEHHHHHHQHLSLQADYHSHQLHSLVPFPSQILVCPMTTSPTTTTIQSLFPSSSSAGSGTMETLDPRQMVSHFQMPLMGNSSSSSSQNISTLYSLLHGSSSNNGGRDIDNRMSSVQFNRTNSTTTANMSRHLGSERCTSRGSDHHM
|
O22768
|
Transcription factor UNE12
|
UNE12
|
Arabidopsis thaliana (related: thale cress)
|
MASNNPHDNLSDQTPSDDFFEQILGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPEGGHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPPQ
|
Q9LVG2
|
AP2-like ethylene-responsive transcription factor TOE2
|
TOE2
|
Arabidopsis thaliana (related: thale cress)
|
MLDLNLDVDSTESTQNERDSITVKGVSLNQMDESVTSNSSVVNAEASSCIDGEDELCSTRTVKFQFEILKGGGEEEEEDDDERSAVMMTKEFFPVAKGMNFMDSSAQSSRSTVDISFQRGKQGGDFIGSGSGGGDASRVMQPPSQPVKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGLEADINFVIGDYEEDLKQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHGNMGCDKAAVQWKGREAASLIEPHASRMIPEAANVKLDLNLGISLSLGDGPKQKDRALRLHHVPNNSVCGRNTMMENHMAAAACDTPFNFLKRGSDHLNNRHALPSAFFSPMERTPEKGLMLRSHQSFPARTWQGHDQSSGGTAVAATAPPLFSNAASSGFSLSATRPPSSTAIHHPSQPFVNLNQPGLYVIHPSDYISQHQHNLMNRPQPPP
|
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: