Effector profile
PlantPEAD ID: PlantPEAD01167 Uniprot ID: NONE Source: Article
Localization: Unknown Pathogen taxonomy ID: 317 Pathogen type: Bacteria
Species: Pseudomonas syringae Strain: pv. tomato strain DC3000 Other name: Pseudomonas syringae tomato
Gene name: HOPF2 NCBI Gene ID: NONE
Entry name: Protein name:
DOI: 10.1126/science.1203659
Gene/Protein information
Gene sequence:
ATAGGTAATATATGCGGCACCTCGGGCTCACGTCATGTGTATAGCCCATCCCATACACAACGAATAACTTCAGCTCCCTCTACATCCACTCATGTTGGTGGAGATACACTGACATCCATTCATCAGCTTTCGCATAGTCAGAGAGAGCAGTTTCTGAACATGCATGATCCAATGAGAGTAATGGGACTTGACCATGATACCGAGCTTTTCAGAACGACGGATAGTCGCTATATAAAAAACGATAAACTCGCGGGCAATCCACAATCCATGGCGAGTATCCTTATGCATGAAGAACTGCGCCCCAATCGTTTTGCCAGCCATACAGGTGCCCAACCACACGAAGCAAGGGCGTACGTTCCGAAAAGAATAAAAGCCACCGATCTAGGAGTTCCATCACTGAACGTAATGACTGGCTCGCTAGCGCGAGACGGAATTAGAGCTTATGATCACATGAGTGATAATCAGGTCTCTGTCAAAATGCGACTGGGAGATTTTCTCGAAAGGGGTGGCAAGGTCTATGCCGACGCTTCGTCTGTAGCTGACGATGGGGAAACATCACAAGCTCTGATTGTCACATTGCCCAAAGGACAGAAAGTGCCGGTCGAAAGGGTCTGA
Protein sequence:
IGNICGTSGSRHVYSPSHTQRITSAPSTSTHVGGDTLTSIHQLSHSQREQFLNMHDPMRVMGLDHDTELFRTTDSRYIKNDKLAGNPQSMASILMHEELRPNRFASHTGAQPHEARAYVPKRIKATDLGVPSLNVMTGSLARDGIRAYDHMSDNQVSVKMRLGDFLERGGKVYADASSVADDGETSQALIVTLPKGQKVPVERV
Protein structure:
NONE
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
22376.1 204 8.11 -0.552 39.62
Plant infestation information
Experimental plant: Arabidopsis thaliana (related: thale cress)
Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana Disease name: Bacterial speck
Host classification: Eudicots NCBI Species: 4081, 3702
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
Q9S736
Protein OBERON 1
OBE1
Arabidopsis thaliana (related: thale cress)
MGTSSGSNLPHQMLPPRQQLQTSLSLVSSDPHLSRSNSGIVRESPAESASSQETWPTSKSIMGRKTDSGKTGPDSHDQHVIRHVSIADKVSLRDIARERLDIVAERMHRLPEEYLEELKNGLKAILEGNGAQPIDEFMFLQKFVQTRSDLTSKTLVRAHRVQLEVLVVINTGIQAFLHPNINLSQSSLIEIFVYKRCRNIACQNELPADGCPCEICANRKGFCNLCMCVICNKFDFAVNTCRWIGCDVCSHWTHTDCAIRDGEISMGVSPKSVSGMGEMLFKCRACNHTSELLGWVKDVFQHCAPNWDRESLMKELDFVSRIFRGSEDTRGRKLFWKCEELMEKIKGGLAEATAAKLILMFFQEIELDSPKSLESGEGGGTIAPQDACNRIAEVVKETLRKMEIVGEEKTRMYKKARMGLEECEREVEEKAKQVAELQMERQKKKQQIEEVERIVRLKQAEAEMFQLKANEAKVEAERLERIVKAKKEKTEEEYASNYLKLRLSEAEAEKEYLFEKIKEQESGGNGGEASQAVMYSKIREMLHGYNASSPRVDPRSNQRNPFRSNP