Effector profile
| PlantPEAD ID: PlantPEAD01222 | Uniprot ID: Q6YKB1 | Source: Article |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 6306 | Pathogen type: Nematoda |
| Species: Meloidogyne incognita | Strain: | Other name: Southern root-knot nematode |
| Gene name: 16D10 | NCBI Gene ID: AY134435 | |
| Entry name: 16D10_MELIC | Protein name: CLAVATA3/ESR (CLE)-related protein 16D10 | |
| DOI: 10.1094/MPMI-19-0463 | ||
Gene/Protein information
Gene sequence:
GAGAAAATAAAATATAAATTATTCCTCAAAAATACCATAAAGTTAATTATTCTTCAATCAAAAAAATGTTTACTAATTCAATTAAAAATTTAATTATTTATTTAATGCCTTTAATGGTTACTTTAATGCTTTTGTCTGTCTCATTTGTGGATGCAGGCAAAAAGCCTAGTGGGCCAAATCCTGGAGGAAATAATTGAAGAAAAATGATTGAAGAAAAACGTTTAAATTAAACGATAAATGGGAAATAATGGAATTTAAATTAAGCTAATTTTGATGGTTTCCTTTGTTAATTTCAACATAAAATTAATTGAATTTACTGAATAAAATTATATCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein sequence:
MFTNSIKNLIIYLMPLMVTLMLLSVSFVDAGKKPSGPNPGGNN
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 4624.55 | 43 | 9.52 | 0.402 | 10.02 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Arabidopsis thaliana | Disease name: Root-knot |
| Host classification: Eudicots | NCBI Species: 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
Q9S7H5
|
Scarecrow-like protein 21
|
SCL21
|
Arabidopsis thaliana (related: thale cress)
|
MDNVRGSIMLQPLPEIAESIDDAICHELSMWPDDAKDLLLIVEAISRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGDGSVLVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK
|
|
O81316
|
Scarecrow-like protein 6
|
SCL6
|
Arabidopsis thaliana (related: thale cress)
|
MPLPFEEFQGKGISCFSSFSSSFPQPPSSPLLSHRKARGGEEEEEEVPAAEPTSVLDSLISPTSSSTVSSSHGGNSAVGGGGDATTDEQCGAIGLGDWEEQVPHDHEQSILGLIMGDSTDPSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHHSVPPSHVSGLLINQSQTHYTQNPAAIFYGHHHHTPPPAKRLNPGPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLESFHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNISAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRCRSS
|
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: