Effector profile
| PlantPEAD ID: PlantPEAD01230 | Uniprot ID: A5WY68 | Source: Article |
| Localization: Cytoplasmic(Exp) | Pathogen taxonomy ID: 1176649 | Pathogen type: Bacteria |
| Species: Agrobacterium fabrum | Strain: A281 | Other name: Agrobacterium tumefaciens |
| Gene name: VirD5 | NCBI Gene ID: DQ058764 | |
| Entry name: A5WY68_RHIRD | Protein name: VirD5 | |
| DOI: 10.1111/nph.12866 | ||
Gene/Protein information
Gene sequence:
ATGACAGGAAAGTCGAAAGTTCACATAAGAGGTTCGGCTGACGCGCTTCCTGACGTTCCTGGCGGAAGTACTACCGCCCCTTTTTTAACCGAACCTTCTCGGGATCAGGTTGATGCCTCGTTTGAGGTCCAAACCGACTACAGCCAGTCTACTTCCGTGTCGTTTACCTATGATGGTGTTGGACTTGGTCCTGCCGAGCGTGCGGCTTACGAGAACTGGTGCGAACCGGGCCGGCCCACTTGGAAAGATCTTATAATCAAGGCACGTGTCGATCCGATTGACGATGTGACCTGGCTCCGAGATTTAGAAGAGGACACCCCCTCAACCTTCAGATACGAAGGGATGCCTCTGGGCATCGGGGAACGACAGGCCTACGAAAATTGGCAAGAGGACGCTCAGCCGACATGGGAAGACCTTGTTGTCAGCGCACGCTTGACGGAACTTGGCCGTCCACACGGGATTACCGGCGAGTATACATCCCTCGCAGGATCGAAGAATACAAGTTCAATTTCATTGAAGCGAAAGCGGAGCAACTTAATTGATGATGAGAATTCATCCGGATCGTTTTCATATGACGGGATGAAGCTCGGGGAAGCCGAGCGTTCTGCATATGGTGACTGGGCCGAGGCGGAGCCACCCACGTGGAAAGATTTGGTATTGAGGGCACGCGTTTCCTCGATCAATGACTCTGCTTGGCTTTTTGATTCACAAACATCTTCATCATCATTTGAATACAACGGTGTTCCCTTGGGCGAGCCGGAACGGCAGGCTCTCAGACAATGGCAAGGAGACGCTCAGCCTACCTGGGAAGATCTCGTTGTTAACGCGCGTATGGCAGAACTTTGCCATGCTGGTTGGATTGAAGGTCAAAAAGGTTGCTTTGAAGAGCGCGGGGAGGCTCTGCCCGCGTCGGAACGCGGTTCGCAACGCCCCATTGGTCAACGGACAGATTCCTCCGATTCTTTTGTGTATGATGGCACAAGGCTCGGAGCACCTGAGCGAACTGCTTATGAACGCTGGAGTAAGAGGGAACGCCCGACTTGGGAAGATCTCATCTTAGATGCACACCAGGCCAGGACTGAAAGTGACGCTGTTACGACCCAAGCGATTGGTCAGTCGTCCTCACCGGTTTTCTTATATGAAGGAAAGTCGCTCGGAGACAGGGAACGAAAGGCTTACGAAAAATGGCGGCAGCCAGCCCAACCGCGATGGCAAAATCTTGTAGTGAACGCTCGTCTGGCAGAAATCGATCCCTCAGCCTGGATTGCCGATGAGCGCGATCCGCTTGATGATAGCGACGCGCTTGGTCGCCCGTCGTACACAAGCTTGACGGATAGATCAGACGTCCCTTTAGACGATCAATCAATCTATCGTCGTTCCGACCTAGTAAGGGAGCAGGTGCCAGAATCGTCTCAAAGGCAATTCGCAGCATGTTCAGAATCTGAAACGAGGCCTGTGCAATGGTTTACTGCTTCTGGGTCAGATGCAAACAATACGGAAAATATCACCGCCAGCGATCCCGTCGATCGCACGGGTGGAGTTAAGCGGCTAGGCTCCAAAAGCGACAGAACCGTTACAGCTTCTATCCATGACGTGAATTCCAGCACAAGGCGACTGTTGCTTAACGAATTTGGATCGGAGGCTCCGCGCCCTTCGCCAGAAAAGACTGTTCGCTTAAGAAGCGACAATATTGGCACCTATGGGAGCCGGAAAAATGAACGAGCGCGGCTCGCGACCGAAACCGGTGCGTATGAGTCGGAGCATATTTTCGGGTTCAAGGCTGTCCACGATACTGCGAGAGCGACGAAAGAGGGCCGGCGTCTCGAAAGGCCCATGCCCGCCTACCTTGAGGATAAGGGGCTTCATCGCCAACATATTGGCACCGGGAGAGGACGGACCAAACTTGTCGGGCGCGGATGGCCGGATGACACAAGCTATCGCTCGGATCAAAGGGCAACTCTGTCGGACCCCGTTGCGCGCTCGGAAGGCGCGACGGCCTCAAATGGGTATCAATTGAACCAATTGGGTTACGCGCACCAACTCGCTAGCGATGGCCTGCAAAGTGAATCGCCCGATGGTGTTGCCTTGCCAATTCAAGTGGCAACAACGAGCTACAACTATACAGTGAGCCGCGATCCTGTCCTTGTTCCGCCGGATAAAAACGAAGCCCCTCAATTGCTGCATCTTGGTCCCCGTGGTCAAACCGAAGCTGTTCTTGCCCGCGAAACAGCATTGACTGGAAAATGGCCGACTCTCGAGCGTGAGCAGCAAGTGTATCGCGAGTTTTTGGCCTTATATGACGTAAAAAAAGATCTTGAGGCCAAATCAGTCGGCGTAAGACGGAAAAAAAAAGAAGTTATTTCTGCGTTAGACCGAACTGCGCGCTTGATAAGCACGTCGCCTTCGAAAGCTCGATCCAAAGCAGAGACTGAAAAAGCCATTGATGAGCTCGATGATCGACGAGTTTATGATCCGCGTGATCGAGCTCAAGACAAAGCGTTTAAACGCTGA
Protein sequence:
MTGKSKVHIRGSADALPDVPGGSTTAPFLTEPSRDQVDASFEVQTDYSQSTSVSFTYDGVGLGPAERAAYENWCEPGRPTWKDLIIKARVDPIDDVTWLRDLEEDTPSTFRYEGMPLGIGERQAYENWQEDAQPTWEDLVVSARLTELGRPHGITGEYTSLAGSKNTSSISLKRKRSNLIDDENSSGSFSYDGMKLGEAERSAYGDWAEAEPPTWKDLVLRARVSSINDSAWLFDSQTSSSSFEYNGVPLGEPERQALRQWQGDAQPTWEDLVVNARMAELCHAGWIEGQKGCFEERGEALPASERGSQRPIGQRTDSSDSFVYDGTRLGAPERTAYERWSKRERPTWEDLILDAHQARTESDAVTTQAIGQSSSPVFLYEGKSLGDRERKAYEKWRQPAQPRWQNLVVNARLAEIDPSAWIADERDPLDDSDALGRPSYTSLTDRSDVPLDDQSIYRRSDLVREQVPESSQRQFAACSESETRPVQWFTASGSDANNTENITASDPVDRTGGVKRLGSKSDRTVTASIHDVNSSTRRLLLNEFGSEAPRPSPEKTVRLRSDNIGTYGSRKNERARLATETGAYESEHIFGFKAVHDTARATKEGRRLERPMPAYLEDKGLHRQHIGTGRGRTKLVGRGWPDDTSYRSDQRATLSDPVARSEGATASNGYQLNQLGYAHQLASDGLQSESPDGVALPIQVATTSYNYTVSRDPVLVPPDKNEAPQLLHLGPRGQTEAVLARETALTGKWPTLEREQQVYREFLALYDVKKDLEAKSVGVRRKKKEVISALDRTARLISTSPSKARSKAETEKAIDELDDRRVYDPRDRAQDKAFKR
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 93282.6 | 836 | 5.33 | -0.852 | 48.22 |
Plant infestation information
| Experimental plant: Arabidopsis thaliana (related: thale cress) | |
| Susceptible plant: | Disease name: Crown gall |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|---|---|---|---|
|
O80480
|
Importin subunit alpha-4
|
IMPA4
|
Arabidopsis thaliana (related: thale cress)
|
MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLPLGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVENLQSHDNNEIYEKAVKILERYWAEEEEEQILQDGGNDNSQQAFNFGNNPAAPVGGFKFA
|
|
Q9MA75
|
Transcription factor VIP1
|
VIP1
|
Arabidopsis thaliana (related: thale cress)
|
MEGGGRGPNQTILSEIEHMPEAPRQRISHHRRARSETFFSGESIDDLLLFDPSDIDFSSLDFLNAPPPPQQSQQQPQASPMSVDSEETSSNGVVPPNSLPPKPEARFGRHVRSFSVDSDFFDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILASVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVVAGEIPQGNGNSYNRAQFSSQQSAMNQFGNKTNQQMSTNGQPSLPSYMDFTKRG
|
|
Q96321
|
Importin subunit alpha-1
|
IMPA1
|
Arabidopsis thaliana (related: thale cress)
|
MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNFS
|
|
Q9FPW4
|
Probable NOT transcription complex subunit VIP2
|
VIP2
|
Arabidopsis thaliana (related: thale cress)
|
MSNLHSSLNGSASNLPDGSGRSFTASYSGQSGAPSPSFHHTGNLQGLHNIHGNYNVGNMQGTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGGGNLGRNISSGGLSIPGLSSRLNLAANSGSGLNVQGQNRMMGGVLPQGSQVMSMLGNSYHTGGGPLSQNHVQSVNNMMLSDHPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSLRKQGLGVPLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNFSMGRSGGFNLGATYSSHRPQQQPQHTSSTGGLQGLGLRPLSSPNAVSSIGYDQLIQQYQQHQNQSQFPVQQMSSINQFRDSEMKSTQSEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTNEPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSLLQL
|
External Links
Interpro: IPR006819
Pfam: PF04730
SMART: SM00795
KEGG:
PRINTS: