Effector profile
| PlantPEAD ID: PlantPEAD01232 | Uniprot ID: G3XDC5 | Source: Database |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tomato strain ATCC BAA-871 / DC3000 | Other name: Pseudomonas syringae tomato |
| Gene name: HopN1 | NCBI Gene ID: AE016853 | |
| Entry name: G3XDC5_PSESM | Protein name: Type III effector HopN1 | |
| DOI: | ||
Gene/Protein information
Gene sequence:
ATGTATATCCAGCAATCTGGCGCCCAATCAGGGGTTGCCGCTAAGACGCAACACGATAAGCCCTCGTCATTGTCCGGACTCGCCCCCGGTTCGTCGGATGCGTTCGCCCGTTTTCATCCCGAAAAGGCGGGCGCCTTTGTCCCATTGGAGGGGCATGAAGAGGTCTTTTTCGATGCGCGCTCTTCCTTTTCGTCGGTCGATGCCGCTGATCTTCCCAGTCCCGAGCAGGTACAACCCCAGCTTCATTCGTTGCGTACCCTGCTACCGGATCTGATGGTCTCTATCGCCTCATTACGTGACGGCGCCACGCAATACATCAAGACCAGAATCAAGGCTATGGCGGACAACAGCATAGGCGCGACTGCGAACATCGAAGCCAAAAGAAAGATTGCCCAAGAGCACGGCTGTCAGCTTGTCCACCCGTTTCACCAGAGCAAATTTCTATTTGAAAAAACTATCGATGATAGAGCGTTTGCTGCTGATTATGGCCGCGCGGGTGGCGACGGGCACGCTTGTCTGGGGCTATCAGTAAATTGGTGTCAGAGCCGTGCAAAAGGGCAGTCGGATGAGGCCTTCTTTCACAAACTGGAGGACTATCAGGGCGATGCATTGCTACCCAGGGTAATGGGCTTCCAGCATATCGAGCAGCAGGCCTATTCAAACAAGTTGCAGAACGCAGCACCTATGCTTCTGGACACACTTCCCAAGTTGGGCATGACACTTGGAAAAGGGCTGGGCAGAGCACAGCACGCGCACTATGCGGTTGCTCTGGAAAACCTTGATCGCGATCTCAAAGCAGTGTTGCAGCCCGGTAAAGACCAGATGCTTCTGTTTTTGAGTGATAGCCATGCGATGGCTCTGCATCAGGACAGTCAGGGATGTCTGCATTTTTTTGATCCTCTTTTTGGCGTGGTTCAGGCAGACAGCTTCAGCAACATGAGCCATTTTCTTGCTGATGTGTTCAAGCGCGACGTAGGTACGCACTGGCGTGGCACGGAGCAACGTCTGCAACTGAGCGAAATGGTGCCCAGAGCAGACTTTCACTTGCGATAA
Protein sequence:
MYIQQSGAQSGVAAKTQHDKPSSLSGLAPGSSDAFARFHPEKAGAFVPLEGHEEVFFDARSSFSSVDAADLPSPEQVQPQLHSLRTLLPDLMVSIASLRDGATQYIKTRIKAMADNSIGATANIEAKRKIAQEHGCQLVHPFHQSKFLFEKTIDDRAFAADYGRAGGDGHACLGLSVNWCQSRAKGQSDEAFFHKLEDYQGDALLPRVMGFQHIEQQAYSNKLQNAAPMLLDTLPKLGMTLGKGLGRAQHAHYAVALENLDRDLKAVLQPGKDQMLLFLSDSHAMALHQDSQGCLHFFDPLFGVVQADSFSNMSHFLADVFKRDVGTHWRGTEQRLQLSEMVPRADFHLR
Loading ...
Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 38554.5 | 350 | 6.3 | -0.335 | 46.68 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Solanum lycopersicum, Arabidopsis thaliana | Disease name: Bacterial speck |
| Host classification: Eudicots | NCBI Species: 4081, 3702 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR038765,IPR006473
Pfam: PF03543
SMART:
KEGG: pst:PSPTO_1370
PRINTS: