Effector profile
| PlantPEAD ID: PlantPEAD01269 | Uniprot ID: A5CLY7 | Source: Database |
| Localization: Apoplastic(Pre) | Pathogen taxonomy ID: 28447 | Pathogen type: Bacteria |
| Species: Clavibacter michiganensis | Strain: subsp. michiganensis strain CMM101 | Other name: |
| Gene name: ChpC (CMM_0052) | NCBI Gene ID: AM711867 | |
| Entry name: A5CLY7_CLAM3 | Protein name: Extracellular serine protease, family S1 (Chymotrypsin) | |
| DOI: | ||
Gene/Protein information
Gene sequence:
ATGTCAAAAACGCATTTTCGCGGTATTTACTTTATTGTCATTCCCATCGCTCTTGGGCTAATGGCCGCCAGTTCTACGGTTTGGAGCGCGTTCGCTACCGAGGGCGCCAGGCAGACACGACCAGTAATTGCGGGTTCGCAGCTTGAATTCGAGTTCGGCGGCGATTGCACTGCAGGTGCTGTGGTACAAAAAAATAGTTGGAGTGCAGTGTTCTTCGCAAAAGAGCGCGCGACTAGATACGTAGTGACTGCTAATCACTGTGTTGCGCGCATAGGGGAAAGGGTATTTGTTAGAAACGAGCTCGAGTCTCGTCACGGTCATGTTCCCCCCATCGGAACGGTTTATTGGAGATCTGATGACGTCGATCTAGCGTTAATTAAAATTGATCCCATTGTTCACGTGTCGTACACGTGTGGGAGTTCTTCACATGGCGCGCCCCACTGCTTGCCGGTGACCACCTGGACGCCAAACGCCCTTCCTCGGGTGCTCACCGCGTCGCTGAGAATGCGGAGCATATATGCCCAACCCGTAATCGGGTACGATAACCCCGGGCTGAATGAAGCTTTTGCTACAAGCGGTAGCACCACTGGTGTACAGGTGAACTGGCGGAATCTATCCGTTCGTGCTTGGCCACCGGGTTTCAGGGACCCTCGAAGCGGAGACCAAGCAGCATCTTCCACAACTGACTTTTTGCTTCCGGGAGATTCCGGAGGGCCTGTATTTAACCCGGATACGGGTATGCTATACGGAATAATGACCGATCAAGTTCCTCATCGTCTCACAGAGCAGAGCACGATGGTGTATATCAAGCTATCTCAGTTTTTCCATGAGCAGAGAGAATACAATCTCGTGACACGTTGA
Protein sequence:
MSKTHFRGIYFIVIPIALGLMAASSTVWSAFATEGARQTRPVIAGSQLEFEFGGDCTAGAVVQKNSWSAVFFAKERATRYVVTANHCVARIGERVFVRNELESRHGHVPPIGTVYWRSDDVDLALIKIDPIVHVSYTCGSSSHGAPHCLPVTTWTPNALPRVLTASLRMRSIYAQPVIGYDNPGLNEAFATSGSTTGVQVNWRNLSVRAWPPGFRDPRSGDQAASSTTDFLLPGDSGGPVFNPDTGMLYGIMTDQVPHRLTEQSTMVYIKLSQFFHEQREYNLVTR
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 31466.7 | 286 | 8.37 | -0.122 | 29.5 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: Solanum melongena, Solanum lycopersicum | Disease name: Bacterial canker |
| Host classification: Eudicots | NCBI Species: 4111, 4081 |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR009003,IPR043504,IPR001254
Pfam: PF13365
SMART:
KEGG: cmi:CMM_0052
PRINTS: